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DeepMetabolism: A Deep Learning System to Predict Phenotype from Genome Sequencing

Weihua Guo, You Xu, Xueyang Feng

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Tags: Biology, Computer science, Deep learning, Medicine, nVidia, nVidia GeForce GTX 1080, Package, Python, TensorFlow

May 11, 2017 by hgpu

A Design Methodology for Efficient Implementation of Deconvolutional Neural Networks on an FPGA

Xinyu Zhang, Srinjoy Das, Ojash Neopane, Ken Kreutz-Delgado

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Tags: Algorithms, Computer science, Computer vision, Deep learning, DSP, FPGA, Neural networks

May 11, 2017 by hgpu

Resource-Aware Just-in-Time OpenCL Compiler for Coarse-Grained FPGA Overlays

Abhishek Kumar Jain, Douglas L. Maskell, Suhaib A. Fahmy

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Tags: ARM, Computer science, DSP, FPGA, Heterogeneous systems, OpenCL

May 11, 2017 by hgpu

Towards Enhancing Performance, Programmability, and Portability in Heterogeneous Computing

Konstantinos Krommydas

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Tags: ATI, ATI Radeon HD 6550, ATI Radeon HD 7660, ATI Radeon HD 7970, Code generation, Compilers, Computer science, FPGA, Heterogeneous systems, Intel Xeon Phi, nVidia, OpenCL, Package, Performance, Tesla K20, Thesis

May 9, 2017 by hgpu

Efficient Parallel Strategy Improvement for Parity Games

John Fearnley

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Tags: Algorithms, Computer science, CUDA, Data Structures and Algorithms, Logic in Computer Science, nVidia, nVidia GeForce GTX 780, Package

May 9, 2017 by hgpu

Fast Sorting Algorithms using AVX-512 on Intel Knights Landing

Berenger Bramas

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Tags: Algorithms, Computer science, Intel Xeon Phi, OpenMP, Package, Sorting

May 9, 2017 by hgpu

Acceleration of Deep Learning on FPGA

Huyuan Li

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Tags: CNN, Computer science, Deep learning, FPGA, Neural networks, nVidia, OpenCL, Tesla K40, Thesis

May 9, 2017 by hgpu

Multidimensional upwind hydrodynamics on unstructured meshes using Graphics Processing Units I. Two-dimensional uniform meshes

Sijme-Jan Paardekooper

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Tags: Algorithms, Astrophysics, cfd, Computational Physics, CUDA, Fluid dynamics, Instrumentation and Methods for Astrophysics, nVidia, Package, Tesla K20, Triangular meshes

May 9, 2017 by hgpu

Compressing DMA Engine: Leveraging Activation Sparsity for Training Deep Neural Networks

Minsoo Rhu, Mike O'Connor, Niladrish Chatterjee, Jeff Pool, Stephen W. Keckler

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Tags: Compression, Computer science, CUDA, Deep learning, Neural networks, nVidia, nVidia GeForce GTX Titan X, Virtualization

May 6, 2017 by hgpu

cuTT: A High-Performance Tensor Transpose Library for CUDA Compatible GPUs

Antti-Pekka Hynninen, Dmitry I. Lyakh

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Tags: Algorithms, Benchmarking, Code generation, Computer science, CUDA, nVidia, Package, Tesla K20, Tesla K40, Tesla M40, Tesla P100

May 6, 2017 by hgpu

GPUQT: An efficient linear-scaling quantum transport code fully implemented on graphics processing units

Zheyong Fan, Ville Vierimaa, Ari Harju

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Tags: Computational Physics, CUDA, nVidia, Package, Physics, Sparse matrix, Tesla K40

May 6, 2017 by hgpu

Numerical Model of Shallow Water: the Use of NVIDIA CUDA Graphics Processors

Tatyana Dyakonova, Alexander Khoperskov, Sergey Khrapov

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Tags: cfd, Computer science, CUDA, Fluid dynamics, Numerical simulation, nVidia, Tesla C2070, Tesla K20, Tesla K40, Tesla K80

May 6, 2017 by hgpu

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MECCA development in accelerators - KPP Fortran to CUDA source-to-source pre-processor

MEDINA: MECCA Development in Accelerators – KPP Fortran to CUDA source-to-source Preprocessor

Internally-maintained tool for examining GPU scheduling behavior

Inferring the Scheduling Policies of an Embedded CUDA GPU

CLBlast: Tuned OpenCL BLAS

CLBlast: A Tuned OpenCL BLAS Library

Open source implementation of the PAAC algorithm presented in Efficient Parallel Methods for Deep Reinforcement Learning

Efficient Parallel Methods for Deep Reinforcement Learning

IDA*

Block-Parallel IDA* for GPUs

Repository for 1D Swept rule scheme written in CUDA C

Accelerating solutions of PDEs with GPU-based swept time-space decomposition

DeepMetabolism: a deep learning algorithm to predict phenotype from genome sequencing

DeepMetabolism: A Deep Learning System to Predict Phenotype from Genome Sequencing

* * *

2017

November

12-14

Seoul, South Korea

4th International Conference on Biomedical and Bioinformatics Engineering (ICBBE), 2017

2017

November

27-30

Auckland, New Zealand

9th International Conference on Signal Processing Systems (ICSPS), 2017

2017

October

11-13

Edmonton, Canada

The 5th International conference on Control, Mechatronics and Automation (ICCMA), 2017

2017

October

11-13

Busan, South Korea

8th International Conference on Biology, Environment and Chemistry (ICBEC), 2017

2017

November

7-9

Wuhan, China

2nd International Conference on Communication and Information Systems (ICCIS), 2017

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high performance computing on graphics processing units: hgpu.org

Applications

DeepMetabolism: A Deep Learning System to Predict Phenotype from Genome Sequencing

A Design Methodology for Efficient Implementation of Deconvolutional Neural Networks on an FPGA

Resource-Aware Just-in-Time OpenCL Compiler for Coarse-Grained FPGA Overlays

Towards Enhancing Performance, Programmability, and Portability in Heterogeneous Computing

Efficient Parallel Strategy Improvement for Parity Games

Fast Sorting Algorithms using AVX-512 on Intel Knights Landing

Acceleration of Deep Learning on FPGA

Multidimensional upwind hydrodynamics on unstructured meshes using Graphics Processing Units I. Two-dimensional uniform meshes

Compressing DMA Engine: Leveraging Activation Sparsity for Training Deep Neural Networks

cuTT: A High-Performance Tensor Transpose Library for CUDA Compatible GPUs

GPUQT: An efficient linear-scaling quantum transport code fully implemented on graphics processing units

Numerical Model of Shallow Water: the Use of NVIDIA CUDA Graphics Processors

Recent source codes

MECCA development in accelerators - KPP Fortran to CUDA source-to-source pre-processor

Internally-maintained tool for examining GPU scheduling behavior

CLBlast: Tuned OpenCL BLAS

Open source implementation of the PAAC algorithm presented in Efficient Parallel Methods for Deep Reinforcement Learning

IDA*

Repository for 1D Swept rule scheme written in CUDA C

DeepMetabolism: a deep learning algorithm to predict phenotype from genome sequencing

OpenDwarfs

parallel-si: Efficient Parallel Strategy Improvement for Parity Games

AVX-512 sort functions

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Featured events

4th International Conference on Biomedical and Bioinformatics Engineering (ICBBE), 2017

9th International Conference on Signal Processing Systems (ICSPS), 2017

The 5th International conference on Control, Mechatronics and Automation (ICCMA), 2017

8th International Conference on Biology, Environment and Chemistry (ICBEC), 2017

2nd International Conference on Communication and Information Systems (ICCIS), 2017