high performance computing on graphics processing units: hgpu.org

Applications

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Evaluating the impact of reordering unstructured meshes on the performance of finite volume GPU solvers

Marc de la Asuncion, Jose M. Mantas, Manuel J. Castro

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Tags: Computer science, CUDA, Finite volume method, nVidia, nVidia GeForce GTX 580, Performance

June 21, 2012 by hgpu

CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform

Yongchao Liu, Bertil Schmidt, Douglas L. Maskell

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Tags: Bioinformatics, Biology, CUDA, nVidia, Package, Tesla C2050

June 21, 2012 by hgpu

FMM-based vortex method for simulation of isotropic turbulence on GPUs, compared with a spectral method

Rio Yokota, L. A. Barba

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Tags: Computational Physics, Computer science, CUDA, Fast multipole method, FFT, Fluid dynamics, N-body simulation, Numerical Analysis, Numerical simulation, nVidia, Package, Spectral methods, Tesla C2070, Tesla M2050

June 21, 2012 by hgpu

GPU Accelerated Greedy Algorithms for Compressed Sensing

Jeffrey D. Blanchard, Jared Tanner

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Tags: Algorithms, Computer science, CUDA, nVidia, Optimization, Sensing, Tesla C2050

June 20, 2012 by hgpu

Towards a GPU-based Implementation of Interaction Nets

Eugen Jiresch

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Tags: Computer science, CUDA, Graph theory, nVidia, nVidia GeForce GTX 460, Package

June 20, 2012 by hgpu

GPU Computing: Image Convolution

Jan Novak, Anton Kaplanyan, Gabor Liktor, Carsten Dachsbacher

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Tags: Education, Image processing, OpenCL, Package

June 20, 2012 by hgpu

Parallel Implementation of the Wu-Manber Algorithm Using the OpenCL Framework

Themistoklis K. Pyrgiotis, Charalampos S. Kouzinopoulos, Konstantinos G. Margaritis

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Tags: Algorithms, Biology, Computational biology, Databases, nVidia, nVidia GeForce GTX 280, OpenCL, Pattern Search, Sequence matching

June 20, 2012 by hgpu

An Investigation into Concurrent Expectation Propagation

David Hall, Alex Kantchelian

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Tags: Algorithms, ATI, ATI Radeon HD 6490 M, Computer science, Machine learning, OpenCL, Physics

June 20, 2012 by hgpu

Two Algorithms for Sorting On Heterogeneous Clusters

Kyle Spafford, Jeremy Meredith, Jeffrey Vetter, Aparna Chandramowlishwaran, David Noble, Richard Vuduc

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Tags: Algorithms, Computer science, CUDA, Heterogeneous systems, MPI, nVidia, OpenMP, Sorting, Tesla M2070

June 19, 2012 by hgpu

Parallel Rendering on Hybrid Multi-GPU Clusters

S. Eilemann, A. Bilgili, M. Abdellah, J. Hernando, M. Makhinya, R. Pajarola, F. Schurmann

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Tags: 3D Graphics and Realism, Computer science, GPU cluster, nVidia, nVidia GeForce GTX 580, OpenGL, Optimization, Rendering, Visualization

June 19, 2012 by hgpu

Optimizing dataflow applications on heterogeneous environments

George Teodoro, Timothy D. R. Hartley, Umit V. Catalyurek, Renato Ferreira

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Tags: Computer science, CUDA, Heterogeneous systems, nVidia, nVidia GeForce 8800 GT, nVidia GeForce GTX 260, Tesla C2050

June 19, 2012 by hgpu

Efficient simulations of long wave propagation and runup using a LBM approach on GPGPU hardware

Christian F. Janssen, Stephan T. Grilli, Manfred Krafczyk

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Tags: Algorithms, CUDA, Fluid dynamics, Lattice Boltzmann model, Numerical simulation, nVidia, Tesla C2070, Wave equation

June 19, 2012 by hgpu

Allo: Accelerator Design Language

Dato: A Task-Based Programming Model for Dataflow Accelerators

Towards Robust Agentic CUDA Kernel Benchmarking, Verification, and Optimization

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Accelerating a Linear Programming Algorithm on AMD GPUs

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

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high performance computing on graphics processing units: hgpu.org

Applications

Evaluating the impact of reordering unstructured meshes on the performance of finite volume GPU solvers

CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform

FMM-based vortex method for simulation of isotropic turbulence on GPUs, compared with a spectral method

GPU Accelerated Greedy Algorithms for Compressed Sensing

Towards a GPU-based Implementation of Interaction Nets

GPU Computing: Image Convolution

Parallel Implementation of the Wu-Manber Algorithm Using the OpenCL Framework

An Investigation into Concurrent Expectation Propagation

Two Algorithms for Sorting On Heterogeneous Clusters

Parallel Rendering on Hybrid Multi-GPU Clusters

Optimizing dataflow applications on heterogeneous environments

Efficient simulations of long wave propagation and runup using a LBM approach on GPGPU hardware

Recent source codes

Allo: Accelerator Design Language

Towards Robust Agentic CUDA Kernel Benchmarking, Verification, and Optimization

HPC Benchmark Survey

HDM: Home made Diffusion Models

General Matrix Multiplication (GEMM)

CrossTL: Universal Programming Language & Translator

TBD-GPU

DG-SWEM - The Discontinuous Galerkin Shallow Water Equation Model

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

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