high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications

The GPU on the simulation of cellular computing models

Jose Cecilia, Jose Garcia, Gines Guerrero, Miguel Martinez-del-Amor, Mario Perez-Jimenez, Manuel Ujaldon

Tags: Computer science, Membrane computing, nVidia, P systems, SAT, Tesla S2050

May 10, 2011 by hgpu

Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming

Jochen Blom, Tobias Jakobi, Daniel Doppmeier, Sebastian Jaenicke, Jorn Kalinowski, Jens Stoye, Alexander Goesmann

Source codes

Tags: Algorithms, Bioinformatics, Biology, CUDA, Next-Generation sequencing, nVidia, Package

May 10, 2011 by hgpu

Fast Parallel Tandem Mass Spectral Library Searching Using GPU Hardware Acceleration

Lydia A. Baumgardner, Avinash K. Shanmugam, Henry Lam, Jimmy K. Eng, Daniel B. Martin

Tags: Biology, Chemistry, CUDA, nVidia, Search, Spectrometry

May 10, 2011 by hgpu

Accelerating image registration of MRI by GPU-based parallel computation

Teng-Yi Huang, Yu-Wei Tang, Shiun-Ying Ju

Tags: Image processing, Image registration, Medicine, MRI

May 10, 2011 by hgpu

Astrophysical particle simulations with large custom GPU clusters on three continents

R. Spurzem, P. Berczik, I. Berentzen, K. Nitadori, T. Hamada, G. Marcus, A. Kugel, R. Männer, J. Fiestas, R. Banerjee, R. Klessen

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Tags: Astrophysics, CUDA, GPU cluster, MPI, N-body simulation, nVidia, Tesla C1060, Tesla C2050

May 10, 2011 by hgpu

Stock trading strategy creation using GP on GPU

Dave McKenney, Tony White

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Tags: Computer science, CUDA, Genetic programming, nVidia

May 10, 2011 by hgpu

Parallel preconditioned conjugate gradient algorithm on GPU

Rudi Helfenstein, Jonas Koko

Tags: Algorithms, Conjugate gradient solver, Mathematics, Sparse matrix

May 10, 2011 by hgpu

Efficient Parallelization of the Stochastic Simulation Algorithm for Chemically Reacting Systems On the Graphics Processing Unit

Hong Li, Linda Petzold

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Tags: Biology, Chemistry, CUDA, nVidia, nVidia GeForce 8800 GTX, Stochastic simulation

May 10, 2011 by hgpu

Twin peaks: a software platform for heterogeneous computing on general-purpose and graphics processors

Jayanth Gummaraju, Laurent Morichetti, Michael Houston, Ben Sander, Benedict R. Gaster, Bixia Zheng

Tags: ATI, Computer science, High-level Languages, OpenCL, Performance, Programming techniques

May 10, 2011 by hgpu

The GPU-based String Matching System in Advanced AC Algorithm

Jiangfeng Peng, Hu Chen, Shaohuai Shi

Tags: Algorithms, Computer science, CUDA, nVidia, String matching

May 9, 2011 by hgpu

GPULib: GPU Computing in High-Level Languages

Peter Messmer, Paul J. Mullowney, Brian E. Granger

Source codes

Tags: Computer science, CUDA, High-level Languages, nVidia, Package

May 9, 2011 by hgpu

GPU-based time parallel cache simulator

Junjie Ma, Han Wan, Xiaopeng Gao, Xiang Long

Tags: Algorithms, Computer science, CUDA, Memory, Memory model, nVidia

May 9, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

See all packages

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high performance computing on graphics processing units: hgpu.org

Applications

The GPU on the simulation of cellular computing models

Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming

Fast Parallel Tandem Mass Spectral Library Searching Using GPU Hardware Acceleration

Accelerating image registration of MRI by GPU-based parallel computation

Astrophysical particle simulations with large custom GPU clusters on three continents

Stock trading strategy creation using GP on GPU

Parallel preconditioned conjugate gradient algorithm on GPU

Efficient Parallelization of the Stochastic Simulation Algorithm for Chemically Reacting Systems On the Graphics Processing Unit

Twin peaks: a software platform for heterogeneous computing on general-purpose and graphics processors

The GPU-based String Matching System in Advanced AC Algorithm

GPULib: GPU Computing in High-Level Languages

GPU-based time parallel cache simulator

Recent source codes

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

Gaia AVU-GSR

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Most viewed papers (last 30 days)