high performance computing on graphics processing units: hgpu.org

hgpu.org » Applications

Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA

Yongchao Liu, Bertil Schmidt, Douglas L. Maskell

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 280, Sequence alignment, Smith-Waterman algorithm

November 27, 2010 by hgpu

Towards Accelerated Computation of Atmospheric Equations Using CUDA

Vaclav Simek, Radim Dvorak, Frantisek Zboril, Jiri Kunovsky

Tags: CUDA, Earth and Space Sciences, nVidia, Partial differential equations, PDEs

November 27, 2010 by hgpu

Boids that see: Using self-occlusion for simulating large groups on GPUs

Alessandro R. Da Silva, Wallace S. Lages, Luiz Chaimowicz

Tags: Artificial intelligence, Computer science, CUDA, Games, nVidia

November 27, 2010 by hgpu

Hierarchical Markov Random Fields Applied to Model Soft Tissue Deformations on Graphics Hardware

Christof Seiler, Philippe Büchler, Lutz-Peter Nolte, Rasmus Paulsen, Mauricio Reyes

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Tags: ATI, ATI Radeon X1300, Computer science, Finite element method, Medicine, OpenGL

November 27, 2010 by hgpu

An emotionally biased ant colony algorithm for pathfinding in games

Jose A. Mocholi, Javier Jaen, Alejandro Catala, Elena Navarro

Tags: Algorithms, Computer science, Games, Path problems

November 27, 2010 by hgpu

Particle-Based Multiple Irregular Volume Rendering on CUDA

Ding Zhongming, Takuma Kawamura, Naohisa Sakamoto, Koji Koyamada

Tags: Computer science, CUDA, nVidia, nVidia GeForce 8800 GTS, Rendering

November 27, 2010 by hgpu

Fast Conjugate Gradients with Multiple GPUs

Ali Cevahir, Akira Nukada, Satoshi Matsuoka

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Tags: Computer science, Conjugate gradient solver, CUDA, Linear Algebra, Matrix multiplication, nVidia, nVidia GeForce 8800 GTS

November 27, 2010 by hgpu

A Note on Auto-tuning GEMM for GPUs

Yinan Li, Jack Dongarra, Stanimire Tomov

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Tags: Computer science, CUDA, Linear Algebra, Matrix multiplication, nVidia, nVidia GeForce GTX 280

November 27, 2010 by hgpu

Efficient Parallelization of Stochastic Simulation Algorithm for Chemically Reacting Systems on the Graphics Processing Unit

Linda Petzold, Hong Li

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Tags: Chemistry, Stochastic simulation

November 27, 2010 by hgpu

Parallel View-Dependent Level-of-Detail Control

L. Hu, P. Sander, H. Hoppe

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Tags: 3D Graphics and Realism, Computer science, HLSL, nVidia, nVidia GeForce 8800 GTX, Rendering, Visualization

November 27, 2010 by hgpu

Real-time virtual environment signal extraction and denoising using programmable graphics hardware

Yang Su, Zhi-Jie Xu, Xiang-Qian Jiang

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Tags: nVidia, nVidia GeForce 7900 GTX, OpenGL, Signal denoising, Signal processing, Wavelet

November 27, 2010 by hgpu

Implications of the Turing completeness of reaction-diffusion models, informed by GPGPU simulations on an XBox 360: cardiac arrhythmias, re-entry and the Halting problem

Simon Scarle

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Tags: Biology, Heart, Medicine, Visualization, Xbox 360

November 27, 2010 by hgpu

Efficient GPU Implementation of Multi-Precision Integer Division

ParEval: A Parallel Code Evaluation Benchmark

ParEval-Repo: A Benchmark Suite for Evaluating LLMs with Repository-level HPC Translation Tasks

FlashSparse: Minimizing Computation Redundancy for Fast Sparse Matrix Multiplications on Tensor Cores

Libra: Synergizing CUDA and Tensor Cores for High-Performance Sparse Matrix Multiplication

exa-AMD: Exascale Accelerated Materials Discovery

Accelerated discovery and design of Fe-Co-Zr magnets with tunable magnetic anisotropy through machine learning and parallel computing

WiLLM: An Open Wireless LLM Communication System

Vcc: the Vulkan Clang Compiler

No More Shading Languages: Compiling C++ to Vulkan Shaders

hpcbench: A set of benchmarking utilities for biomolecular simulation tools

Engineering Supercomputing Platforms for Biomolecular Applications

HPCTransCompile: An AI Compiler Generated Dataset for High-Performance CUDA Transpilation and LLM Preliminary Exploration

chemtrain: Training Molecular Dynamics Potentials in JAX

chemtrain-deploy: A parallel and scalable framework for machine learning potentials in million-atom MD simulations

microSYCL: SYCL micro-benchmarks repository

Exploring SYCL as a Portability Layer for High-Performance Computing on CPUs

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high performance computing on graphics processing units: hgpu.org

Applications

Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA

Towards Accelerated Computation of Atmospheric Equations Using CUDA

Boids that see: Using self-occlusion for simulating large groups on GPUs

Hierarchical Markov Random Fields Applied to Model Soft Tissue Deformations on Graphics Hardware

An emotionally biased ant colony algorithm for pathfinding in games

Particle-Based Multiple Irregular Volume Rendering on CUDA

Fast Conjugate Gradients with Multiple GPUs

A Note on Auto-tuning GEMM for GPUs

Efficient Parallelization of Stochastic Simulation Algorithm for Chemically Reacting Systems on the Graphics Processing Unit

Parallel View-Dependent Level-of-Detail Control

Real-time virtual environment signal extraction and denoising using programmable graphics hardware

Implications of the Turing completeness of reaction-diffusion models, informed by GPGPU simulations on an XBox 360: cardiac arrhythmias, re-entry and the Halting problem

Recent source codes

Efficient GPU Implementation of Multi-Precision Integer Division

ParEval: A Parallel Code Evaluation Benchmark

FlashSparse: Minimizing Computation Redundancy for Fast Sparse Matrix Multiplications on Tensor Cores

exa-AMD: Exascale Accelerated Materials Discovery

WiLLM: An Open Wireless LLM Communication System

Vcc: the Vulkan Clang Compiler

hpcbench: A set of benchmarking utilities for biomolecular simulation tools

HPCTransCompile: An AI Compiler Generated Dataset for High-Performance CUDA Transpilation and LLM Preliminary Exploration

chemtrain: Training Molecular Dynamics Potentials in JAX

microSYCL: SYCL micro-benchmarks repository

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