high performance computing on graphics processing units: hgpu.org

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hgpu.org » Applications

High-Speed Private Information Retrieval Computation on GPU

Carlos Aguilar Melchor, Benoit Crespin, Philippe Gaborit, Vincent Jolivet, Pierre Rousseau

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Tags: Computer science, CUDA, Information Retrieval, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce 8800 GTX, nVidia GeForce 8800 Ultra, Package

April 22, 2011 by hgpu

Parallel calculation of the median and order statistics on GPUs with application to robust regression

Gleb Beliakov

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Tags: Algorithms, Computer science, CUDA, Data Structures and Algorithms, Numerical Analysis, nVidia, Package, Tesla C2050

April 19, 2011 by hgpu

CUDA-BLASTP: Accelerating BLASTP on CUDA-Enabled Graphics Hardware

Weiguo Liu, Bertil Schmidt, Wolfgang Muller-Wittig

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Tags: Bioinformatics, Biology, BLAST, CUDA, nVidia, nVidia GeForce GTX 295, Package, Sequence alignment

April 18, 2011 by hgpu

CULA: hybrid GPU accelerated linear algebra routines

John R. Humphrey, Daniel K. Price, Kyle E. Spagnoli, Aaron L. Paolini, Eric J. Kelmelis

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Tags: Computer science, CUDA, CULA, Linear Algebra, nVidia, Package, Tesla C1060

April 11, 2011 by hgpu

Exact and complete short read alignment to microbial genomes using GPU programming

Jochen Blom, Tobias Jakobi, Daniel Doppmeier, Sebastian Jaenicke, Jorn Kalinowski, Jens Stoye, Alexander Goesmann

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Tags: Bioinformatics, Biology, CUDA, Next-Generation sequencing, nVidia, nVidia GeForce GTX 280, Package

April 11, 2011 by hgpu

DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI

Yongchao Liu, Bertil Schmidt, Douglas Maskell

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Tags: Bioinformatics, Biology, CUDA, MPI, Next-Generation sequencing, nVidia, OpenMP, Package, Tesla S1070

April 11, 2011 by hgpu

Parallel Dense Gauss-Seidel Algorithm on Many-Core Processors

H. Courtecuisse, J. Allard

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Tags: Algorithms, Computer science, CUDA, Medicine, nVidia, nVidia GeForce GTX 280, Package, Physics-based simulation, Surgical simulation

April 8, 2011 by hgpu

A Static Task Partitioning Approach for Heterogeneous Systems Using OpenCL

Dominik Grewe, Michael O'Boyle

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Tags: ATI, ATI Radeon HD 5970, Benchmarking, Computer science, Heterogeneous systems, OpenCL, Package, Task scheduling

April 4, 2011 by hgpu

Poster: GPU-accelerated rigid body fitting of atomic structures into electron density maps

Edward W. Lowe Jr., Nils Woetzel, Jens Meiler

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Tags: ATI, ATI Radeon HD 5970, Biology, Cryo-EM, Molecular modeling, nVidia, nVidia GeForce GTX 470, OpenCL, Package, Poster, Tesla C1060, Tesla C2050

April 1, 2011 by hgpu

PyCUDA and PyOpenCL: A Scripting-Based Approach to GPU Run-Time Code Generation

Andreas Klockner, Nicolas Pinto, Yunsup Lee, Bryan Catanzaro, Paul Ivanov, Ahmed Fasih

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Tags: Code generation, Computer science, CUDA, High-level Languages, nVidia, nVidia GeForce 8600 GT, nVidia GeForce 9400 M, nVidia GeForce GTX 295, nVidia GeForce GTX 480, OpenCL, Package, PyOpenCL, Python, Software Engineering, Tesla C1060

March 30, 2011 by hgpu

GMH: A Message Passing Toolkit for GPU Clusters

Jie Chen, William Watson III, Weizhen Mao

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Tags: Computer science, CUDA, GPU cluster, MPI, nVidia, nVidia GeForce GTX 285, Package

March 28, 2011 by hgpu

Parallel data mining on graphics processors

Wenbin Fang, Ka Keung Lau, Mian Lu, Xiangye Xiao, Chi Kit Lam, Philip Yang Yang, Bingsheng He, Qiong Luo, Pedro V. Sander, Ke Yang

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Tags: Computer science, CUDA, Data mining, nVidia, nVidia GeForce GTX 280, Package

March 28, 2011 by hgpu

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

Effects of OpenCL-Based Parallelization Methods on Explicit Numerical Methods to Solve the Heat Equation

UVaFTLE: Lagrangian finite time Lyapunov exponent extraction for fluid dynamic applications

Challenging Portability Paradigms: FPGA Acceleration Using SYCL and OpenCL

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high performance computing on graphics processing units: hgpu.org

Packages

High-Speed Private Information Retrieval Computation on GPU

Parallel calculation of the median and order statistics on GPUs with application to robust regression

CUDA-BLASTP: Accelerating BLASTP on CUDA-Enabled Graphics Hardware

CULA: hybrid GPU accelerated linear algebra routines

Exact and complete short read alignment to microbial genomes using GPU programming

DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI

Parallel Dense Gauss-Seidel Algorithm on Many-Core Processors

A Static Task Partitioning Approach for Heterogeneous Systems Using OpenCL

Poster: GPU-accelerated rigid body fitting of atomic structures into electron density maps

PyCUDA and PyOpenCL: A Scripting-Based Approach to GPU Run-Time Code Generation

GMH: A Message Passing Toolkit for GPU Clusters

Parallel data mining on graphics processors

Recent source codes

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Effects of OpenCL-Based Parallelization Methods on Explicit Numerical Methods to Solve the Heat Equation

Faial: finds bugs in CUDA kernels

Intel® SHMEM: Device initiated shared memory based communication library

miniLB: Lattice Botlzmann miniapp w/SYCL

AFOCL

2domination

MFC: Exascale simulation of multiphase/physics fluid dynamics

UVaFTLE: Lagrangian finite time Lyapunov exponent extraction for fluid dynamic applications

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