high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications

Acceleration of the MMFF94 routines within OpenBabel using Eigen and OpenCL

Omar Valerio Minero

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Tags: Chemistry, Molecular modeling, OpenCL, Package, Thesis

February 28, 2013 by hgpu

SOAP3-dp: Fast, Accurate and Sensitive GPU-based Short Read Aligner

Ruibang Luo, Thomas Wong, Jianqiao Zhu, Chi-Man Liu, Edward Wu, Lap-Kei Lee, Haoxiang Lin, Wenjuan Zhu, David W. Cheung, Hing-Fung Ting, Siu-Ming Yiu, Chang Yu, Yingrui Li, Ruiqiang Li, Tak-Wah Lam

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Tags: Algorithms, Bioinformatics, Biology, CUDA, Next-Generation sequencing, nVidia, Package, Tesla C2070, Tesla M2050

February 25, 2013 by hgpu

Graphics Card as a Cheap Supercomputer

Jan Prikryl

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 275, Overview, Package

February 25, 2013 by hgpu

Scheduling a Parallel Sparse Direct Solver to Multiple GPUs

Kyungjoo Kim

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Tags: Computer science, CUDA, Factorization, FEM, Finite element method, Heterogeneous systems, nVidia, Package, Sparse direct solvers, Task scheduling, Tesla M2070

February 21, 2013 by hgpu

Chrono: a parallel multi-physics library for rigid-body, flexible-body, and fluid dynamics

H. Mazhar, T. Heyn, A. Pazouki, D. Melanz, A. Seidl, A. Bartholomew, A. Tasora, D. Negrut

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Tags: CUDA, Fluid dynamics, nVidia, Package, Physics, Visualization

February 21, 2013 by hgpu

ClusCo: clustering and comparison of protein models

Jamroz Michal, Kolinski Andrzej

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Tags: Biology, Biomolecules, Clustering, Computational Engineering, CUDA, Finance, nVidia, nVidia GeForce GTX 470, Package

February 20, 2013 by hgpu

Massively Parallel Computing in Economics

Eric M. Aldrich

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Tags: CUDA, Finance, nVidia, Package, Review, Stochastic simulation, Tesla C2075

February 15, 2013 by hgpu

Developing Performance-Portable Molecular Dynamics Kernels in OpenCL

S. J. Pennycook, S. A. Jarvis

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Tags: ATI, ATI FirePro V7800, ATI Radeon HD 6550, Benchmarking, Computer science, Molecular dynamics, nVidia, nVidia GeForce GTX 680, OpenCL, Package, Performance, Tesla C1060, Tesla C2050

February 14, 2013 by hgpu

A multi-lane traffic simulation model via continuous cellular automata

Emanuele Rodaro, Oznur Yeldan

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Tags: Cellular automata, Computer science, CUDA, nVidia, nVidia GeForce GT 555 M, Package, Python

February 9, 2013 by hgpu

Betweenness Centrality on GPUs and Heterogeneous Architectures

Ahmet Erdem Sariyuce, Kamer Kaya, Erik Saule, Umit V. Catalyurek

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Tags: Computer science, CUDA, Graph theory, Heterogeneous systems, nVidia, Package, Tesla C2050, Virtualization

February 7, 2013 by hgpu

Binary Interval Search: a scalable algorithm for counting interval intersections

Ryan M. Layer, Kevin Skadron, Gabriel Robins, Ira M. Hall, Aaron R. Quinlan

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Tags: Algorithms, Bioinformatics, Biology, Computer science, CUDA, Monte Carlo simulation, nVidia, Package, Sequence alignment

February 6, 2013 by hgpu

A Comparison of CPU and OpenCL Parallelization Methods for Correlation and Graph Layout Algorithms used in the Network Analysis of High Dimensional Data

Athanasios Theocharidis, Gibran Hemani, Michael Kargas, Tom C. Freeman

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Tags: ATI, ATI Radeon HD 5870, ATI Radeon HD 6970, Biology, Graph layout, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 580, OpenCL, OpenGL, Package, Visualization

February 5, 2013 by hgpu

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

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high performance computing on graphics processing units: hgpu.org

Applications

Acceleration of the MMFF94 routines within OpenBabel using Eigen and OpenCL

SOAP3-dp: Fast, Accurate and Sensitive GPU-based Short Read Aligner

Graphics Card as a Cheap Supercomputer

Scheduling a Parallel Sparse Direct Solver to Multiple GPUs

Chrono: a parallel multi-physics library for rigid-body, flexible-body, and fluid dynamics

ClusCo: clustering and comparison of protein models

Massively Parallel Computing in Economics

Developing Performance-Portable Molecular Dynamics Kernels in OpenCL

A multi-lane traffic simulation model via continuous cellular automata

Betweenness Centrality on GPUs and Heterogeneous Architectures

Binary Interval Search: a scalable algorithm for counting interval intersections

A Comparison of CPU and OpenCL Parallelization Methods for Correlation and Graph Layout Algorithms used in the Network Analysis of High Dimensional Data

Recent source codes

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

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