high performance computing on graphics processing units: hgpu.org

Programming

hgpu.org » Programming

cuBLASTP: Fine-Grained Parallelization of Protein Sequence Search on a GPU

Jing Zhang, Hao Wang, Heshan Lin, Wu-chun Feng

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Tags: Bioinformatics, Biology, CUDA, Next-Generation sequencing, nVidia, Sequence alignment, Tesla K20

May 23, 2014 by hgpu

Petascale Application of a Coupled CPU-GPU Algorithm for Simulation and Analysis of Multiphase Flow Solutions in Porous Medium Systems

James E. McClure, Hao Wang, Jan F. Prins, Cass T. Miller, Wu-chun Feng

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Tags: Algorithms, CUDA, Fluid dynamics, Heterogeneous systems, Lattice Boltzmann model, MPI, nVidia, Tesla K20

May 23, 2014 by hgpu

A Tool for Interactive Parallelization

Ritu Arora, Julio Olaya, Madhav Gupta

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Tags: Computer science, CUDA, MPI, nVidia, Programming techniques

May 21, 2014 by hgpu

Vector Quantization: A Many-Core Approach

Rita Silva, Telmo Marques, Jorge Desirat, Patricio Domingues

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Tags: Algorithms, Compression, Computer science, CUDA, nVidia, nVidia GeForce GTX 480, OpenCL, Vector quantization

May 21, 2014 by hgpu

3D Object Recognition using Convolutional Neural Networks with Transfer Learning between Input Channels

Luis A. Alexandre

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Tags: CNN, Computer science, Computer vision, CUDA, Image recognition, Neural networks, nVidia, nVidia GeForce GTX 680

May 21, 2014 by hgpu

Simulation Studies of Viral Advertisement Diffusion on Multi-GPU

Jiangming Jin, Stephen John Turner, Bu-Sung Lee, Jianlong Zhong, Bingsheng He

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Tags: Computer science, CUDA, nVidia, Tesla C2050

May 21, 2014 by hgpu

A High Memory Bandwidth FPGA Accelerator for Sparse Matrix-Vector Multiplication

Jeremy Fowers, Kalin Ovtcharov, Karin Strauss, Eric S. Chung, Greg Stitt

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Tags: Computer science, CUDA, FPGA, nVidia, nVidia GeForce GTX 580, Sparse matrix

May 21, 2014 by hgpu

Developing a compiler for the XeonPhi

Paul Cockshott, Susanne Oehler, Tian Xu

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Tags: Compilers, Computer science, CUDA, Intel Xeon Phi, nVidia, nVidia GeForce GTX 770, Performance

May 21, 2014 by hgpu

A performance/cost evaluation for a GPU-based drug discovery application on volunteer computing

Gines David Guerrero Hernandez, Baldomero Imbernon, Horacio Perez-Sanchez, Francisco Sanz, Jose M. Garcia, Jose M. Cecilia

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Tags: Bioinformatics, Biology, CUDA, Medicine, nVidia, nVidia GeForce 7300 GT, nVidia GeForce GTX 465, nVidia GeForce GTX 480, nVidia GeForce GTX 590, Tesla C2070, Tesla K20

May 21, 2014 by hgpu

A combined MPI-CUDA parallel solution of linear and nonlinear Poisson-Boltzmann equation

Jose Colmenares, Antonella Galizia, Jesus Ortiz, Andrea Clematis, Walter Rocchia

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Tags: Algorithms, Biology, Boltzmann equation, CUDA, Electrostatic potential, Electrostatics, Heterogeneous systems, Macromolecule, MPI, nVidia, nVidia GeForce GTX 580, Poisson Boltzmann, Tesla C2075

May 21, 2014 by hgpu

2-D Impulse Noise Suppression by Recursive Gaussian Maximum Likelihood Estimation

Yang Chen, Jian Yang, Huazhong Shu, Luyao Shi, Jiasong Wu, Limin Luo, Jean-Louis Coatrieux, Christine Toumoulin

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Tags: Algorithms, CUDA, Image processing, nVidia, nVidia GeForce GTX 465

May 21, 2014 by hgpu

A Comparison of Serial & Parallel Particle Filters for Time Series Analysis

David Klemish

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 660 Ti, Particle filtering, Programming techniques, Thesis, Thrust

May 21, 2014 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

See all packages

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high performance computing on graphics processing units: hgpu.org

Programming

cuBLASTP: Fine-Grained Parallelization of Protein Sequence Search on a GPU

Petascale Application of a Coupled CPU-GPU Algorithm for Simulation and Analysis of Multiphase Flow Solutions in Porous Medium Systems

A Tool for Interactive Parallelization

Vector Quantization: A Many-Core Approach

3D Object Recognition using Convolutional Neural Networks with Transfer Learning between Input Channels

Simulation Studies of Viral Advertisement Diffusion on Multi-GPU

A High Memory Bandwidth FPGA Accelerator for Sparse Matrix-Vector Multiplication

Developing a compiler for the XeonPhi

A performance/cost evaluation for a GPU-based drug discovery application on volunteer computing

A combined MPI-CUDA parallel solution of linear and nonlinear Poisson-Boltzmann equation

2-D Impulse Noise Suppression by Recursive Gaussian Maximum Likelihood Estimation

A Comparison of Serial & Parallel Particle Filters for Time Series Analysis

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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