high performance computing on graphics processing units: hgpu.org

Programming

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Action Spotting and Recognition Based on a Spatiotemporal Orientation Analysis

Konstantinos G. Derpanis, Mikhail Sizintsev, Kevin J. Cannons, Richard P. Wildes

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Tags: Computer science, Computer vision, CUDA, nVidia, nVidia GeForce 8400 GT, nVidia GeForce GTS 360 M, nVidia GeForce GTX 285, nVidia Quadro FX 1800

February 6, 2013 by hgpu

Binary Interval Search: a scalable algorithm for counting interval intersections

Ryan M. Layer, Kevin Skadron, Gabriel Robins, Ira M. Hall, Aaron R. Quinlan

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Tags: Algorithms, Bioinformatics, Biology, Computer science, CUDA, Monte Carlo simulation, nVidia, Package, Sequence alignment

February 6, 2013 by hgpu

Performance Evaluation of Sparse Matrix Multiplication Kernels on Intel Xeon Phi

Erik Saule, Kamer Kaya, Umit V. Catalyurek

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Tags: Computer science, CUDA, Hardware Architecture, Intel, Intel Phi, Matrix multiplication, nVidia, Performance, Sparse matrix, Tesla C2050, Tesla K20

February 6, 2013 by hgpu

An Implementation of Conflict-Free Offline Permutation on the GPU

Akihiko Kasagi, Koji Nakano, Yasuaki Ito

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Tags: Computer science, CUDA, Memory, Memory model, nVidia, nVidia GeForce GTX 680, Performance

February 6, 2013 by hgpu

Hardware Accelerated Molecular Docking: A Survey

Imre Pechan, Bela Feher

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Tags: Bioinformatics, Biology, CUDA, FPGA, Molecular simulation, nVidia, Tesla C1060

February 6, 2013 by hgpu

Parallel k-Means Image Segmentation Using Sort, Scan & Connected Components on a GPU

Michael Backer, Jan Tunnermann, Barbel Mertsching

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Tags: CUDA, Image processing, nVidia, nVidia GeForce GTX 580

February 6, 2013 by hgpu

Implementation of Fast Artificial Neural Network for Pattern Classification on Heterogeneous System

Devendra Singh Bharangar, Amit Doeger, Yogesh Kumar Mittal

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Tags: ATI, Computer science, Heterogeneous systems, Neural networks, nVidia, OpenCL

February 6, 2013 by hgpu

A Multi-GPU Sources Reconstruction Method for Imaging Applications

Miguel Lopez-Portugues, Yuri Alvarez, Jesus A. Lopez-Fernandez, Cebrian Garcia, Rafael G. Ayestaran, Fernando Las-Heras

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Tags: CUDA, Electrodynamics, GPU cluster, nVidia, nVidia GeForce GTX 560, nVidia GeForce GTX 680, Signal processing

February 6, 2013 by hgpu

Grex: An efficient MapReduce framework for graphics processing units

Can Basaran, Kyoung-Don Kang

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Tags: Computer science, CUDA, MapReduce, nVidia, nVidia GeForce GTX 460

February 5, 2013 by hgpu

GPU-Accelerated High-Accuracy Molecular Docking using Guided Differential Evolution

Martin Simonsen, Mikael H. Christensen, Rene Thomsen, Christian N. S. Pedersen

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Tags: Biology, CUDA, Differential evolution, Medicine, nVidia, nVidia GeForce 8800 GT, Pharmaceuticals

February 5, 2013 by hgpu

A Comparison of CPU and OpenCL Parallelization Methods for Correlation and Graph Layout Algorithms used in the Network Analysis of High Dimensional Data

Athanasios Theocharidis, Gibran Hemani, Michael Kargas, Tom C. Freeman

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Tags: ATI, ATI Radeon HD 5870, ATI Radeon HD 6970, Biology, Graph layout, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 580, OpenCL, OpenGL, Package, Visualization

February 5, 2013 by hgpu

Real-Time Phase Masks for Interactive Stimulation of Optogenetic Neurons

Stephan C. Kramer, Johannes Hagemann, D. Russell Luke

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Tags: Biology, CUDA, Mathematics, Neurons and Cognition, nVidia, Optimization, Tesla C2070

February 5, 2013 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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high performance computing on graphics processing units: hgpu.org

Programming

Action Spotting and Recognition Based on a Spatiotemporal Orientation Analysis

Binary Interval Search: a scalable algorithm for counting interval intersections

Performance Evaluation of Sparse Matrix Multiplication Kernels on Intel Xeon Phi

An Implementation of Conflict-Free Offline Permutation on the GPU

Hardware Accelerated Molecular Docking: A Survey

Parallel k-Means Image Segmentation Using Sort, Scan & Connected Components on a GPU

Implementation of Fast Artificial Neural Network for Pattern Classification on Heterogeneous System

A Multi-GPU Sources Reconstruction Method for Imaging Applications

Grex: An efficient MapReduce framework for graphics processing units

GPU-Accelerated High-Accuracy Molecular Docking using Guided Differential Evolution

A Comparison of CPU and OpenCL Parallelization Methods for Correlation and Graph Layout Algorithms used in the Network Analysis of High Dimensional Data

Real-Time Phase Masks for Interactive Stimulation of Optogenetic Neurons

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

Most viewed papers (last 30 days)