high performance computing on graphics processing units: hgpu.org

Programming

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BarraCUDA – a fast short read sequence aligner using graphics processing units

Petr Klus, Simon Lam, Dag Lyberg, Ming Sin Cheung, Graham Pullan, Ian McFarlane, Giles S. H. Yeo, Brian Y. H. Lam

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Tags: Bioinformatics, Biology, CUDA, nVidia, Package, Sequence alignment, Tesla M2050, Tesla M2090

January 13, 2012 by hgpu

Efficient Convex Optimization Approaches to Variational Image Fusion

Jing Yuan, Brandon Miles, Juan Shi, Greg Garvin, Xue-Cheng Tai, Aaron Fenster

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Tags: Algorithms, CUDA, Image processing, Medicine, nVidia, Optimization, Sensing, Tesla C1060

January 13, 2012 by hgpu

DFG Implementation on Multi GPU Cluster with Computation-Communication Overlap

Sylvain Huet, Vincent Boulos, Vincent Fristot, Luc Salvo

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Tags: Algorithms, CUDA, DSP, GPU cluster, nVidia, nVidia GeForce GTX 285, Signal processing

January 13, 2012 by hgpu

Acceleration and Optimisation of a Monte Carlo Code for Light Propagation in Sprays and Other Scattering Media

Joakim Jonsson

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Tags: CUDA, Monte Carlo simulation, nVidia, nVidia GeForce GTX 460, Optics, Optimization, Physics, Thesis

January 13, 2012 by hgpu

Towards ad-hoc GPU acceleration of parallel eigensystem computations

Michael T. Garba, Horacio Gonzalez-Velez

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Tags: Computer science, CUDA, Linear Algebra, nVidia, Tesla C2050

January 13, 2012 by hgpu

GPU-based parallel solver via the Kantorovich theorem for the nonlinear Bernstein polynomial systems

Feifei Wei, Jieqing Feng, Hongwei Lin

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Tags: Algorithms, CUDA, Mathematics, Nonlinear Sciences, nVidia, nVidia GeForce GTX 280

January 13, 2012 by hgpu

Parallel Implementations of Hopfield Neural Networks On GPU

Li Liang

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Tags: Algorithms, Computer science, CUDA, Neural networks, nVidia, nVidia GeForce GTX 480, Optimization

January 13, 2012 by hgpu

Efficient Parallel CKY Parsing on GPUs

Youngmin Yi, Chao-Yue Lai, Slav Petrov, Kurt Keutzer

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Tags: Algorithms, Computer science, CUDA, Data parallelism, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 480, Text mining

January 13, 2012 by hgpu

GPU Implementation of a Multiobjective Search Algorithm

Steffen Limmer, Dietmar Fey, Johannes Jahn

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Tags: Algorithms, Computer science, CUDA, nVidia, Optimization, Search, Tesla C2050

January 13, 2012 by hgpu

A Real-Time Capable Software-Defined Receiver Using GPU for Adaptive Anti-Jam GPS Sensors

Jiwon Seo, Yu-Hsuan Chen, David S. De Lorenzo, Sherman Lo, Per Enge, Dennis Akos, Jiyun Lee

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Tags: CUDA, nVidia, nVidia GeForce GTX 480, Optimization, Signal processing

January 13, 2012 by hgpu

Parallel mutual information estimation for inferring gene regulatory networks on GPUs

Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang Muller-Wittig

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Tags: Algorithms, Biology, Computational biology, CUDA, Image processing, Machine learning, nVidia, Package, Tesla C2050

January 13, 2012 by hgpu

Parallel unmixing of remotely sensed hyperspectral images on commodity graphics processing units

Sergio Sanchez, Abel Paz, Gabriel Martin, Antonio Plaza

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Tags: CUDA, Image processing, nVidia, nVidia GeForce 9800 GX2, nVidia GeForce GTX 275, Tesla C1060

January 13, 2012 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Programming

BarraCUDA – a fast short read sequence aligner using graphics processing units

Efficient Convex Optimization Approaches to Variational Image Fusion

DFG Implementation on Multi GPU Cluster with Computation-Communication Overlap

Acceleration and Optimisation of a Monte Carlo Code for Light Propagation in Sprays and Other Scattering Media

Towards ad-hoc GPU acceleration of parallel eigensystem computations

GPU-based parallel solver via the Kantorovich theorem for the nonlinear Bernstein polynomial systems

Parallel Implementations of Hopfield Neural Networks On GPU

Efficient Parallel CKY Parsing on GPUs

GPU Implementation of a Multiobjective Search Algorithm

A Real-Time Capable Software-Defined Receiver Using GPU for Adaptive Anti-Jam GPS Sensors

Parallel mutual information estimation for inferring gene regulatory networks on GPUs

Parallel unmixing of remotely sensed hyperspectral images on commodity graphics processing units

Recent source codes

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LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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