high performance computing on graphics processing units: hgpu.org

Programming

hgpu.org » Programming » CUDA

CUDA Based Fast Implementation of Very Large Matrix Computation

Yinghong Sun, Yuanman Tong

Tags: Computer science, CUDA, Linear Algebra, Matrix multiplication, nVidia

June 10, 2011 by hgpu

cuGWAM: Genome-wide association multifactor dimensionality reduction using CUDA-enabled high-performance graphics processing unit

Min-Seok Kwon, Kyunga Kim, Sungyoung Lee, Taesung Park

Source codes

Tags: Bioinformatics, Biology, CUDA, Genetics, nVidia, Package

June 9, 2011 by hgpu

Low-Frequency MLFMA on Graphics Processors

M. Cwikla, J. Aronsson, V. Okhmatovski

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Tags: CUDA, Electrodynamics, Fast multipole method, nVidia, nVidia Quadro FX 5800

June 9, 2011 by hgpu

SAR focusing of P-band ice sounding data using back-projection

Anders Kusk, Jorgen Dall

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Tags: CUDA, Earth and Space Sciences, nVidia, nVidia GeForce GTX 260

June 9, 2011 by hgpu

Parallelism of Clonal Selection for PSP on CUDA

Hongbing Zhu, Heng Xiao, JinGuang Gu

Tags: Biology, CUDA, Macromolecule, nVidia

June 9, 2011 by hgpu

Parallel multi-level analytical global placement on graphics processing units

Jason Cong, Yi Zou

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Tags: Algorithms, CAD, Computer science, CUDA, nVidia, Performance, Tesla C1060

June 9, 2011 by hgpu

Parallelization of tau-leap coarse-grained Monte Carlo simulations on GPUs

Lifan Xu, Michela Taufer, Stuart Collins, Dionisios G. Vlachos

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Tags: Chemistry, CUDA, Data parallelism, GPU cluster, Monte Carlo simulation, nVidia, Physics, Tesla S1070

June 9, 2011 by hgpu

Fast, Processor-Cardinality Agnostic PRNG with a Tracking Application

Andrew Janowczyk, Sharat Chandran, Srinivas Aluru

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce 8800 GTS, Particle filtering, Pseudo-random number generators

June 7, 2011 by hgpu

GENIE: a software package for gene-gene interaction analysis in genetic association studies using multiple GPU or CPU cores

Satish Chikkagoudar, Kai Wang, Mingyao Li

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Source codes

Tags: Biology, CUDA, Genetics, nVidia, nVidia Quadro FX 1800, Package, Tesla C1060

June 7, 2011 by hgpu

DEMCMC-GPU: An Efficient Multi-Objective Optimization Method with GPU Acceleration on the Fermi Architecture

Weihang Zhu, Ashraf Yaseen, Yaohang Li

Tags: Computer science, CUDA, Differential evolution, Monte Carlo simulation, nVidia, Optimization

June 7, 2011 by hgpu

Multi-thread implementations of the lattice Boltzmann method on non-uniform grids for CPUs and GPUs

M. Schonherr, K. Kucher, M. Geier, M. Stiebler, S. Freudiger, M. Krafczyk

Tags: CUDA, Lattice Boltzmann model, Mathematics, nVidia

June 7, 2011 by hgpu

Massively Parallel Network Coding on GPUs

Xiaowen Chu, Kaiyong Zhao, Mea Wang

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Tags: Algorithms, Computer science, CUDA, Networks, nVidia, nVidia GeForce GTX 260

June 6, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Programming

CUDA Based Fast Implementation of Very Large Matrix Computation

cuGWAM: Genome-wide association multifactor dimensionality reduction using CUDA-enabled high-performance graphics processing unit

Low-Frequency MLFMA on Graphics Processors

SAR focusing of P-band ice sounding data using back-projection

Parallelism of Clonal Selection for PSP on CUDA

Parallel multi-level analytical global placement on graphics processing units

Parallelization of tau-leap coarse-grained Monte Carlo simulations on GPUs

Fast, Processor-Cardinality Agnostic PRNG with a Tracking Application

GENIE: a software package for gene-gene interaction analysis in genetic association studies using multiple GPU or CPU cores

DEMCMC-GPU: An Efficient Multi-Objective Optimization Method with GPU Acceleration on the Fermi Architecture

Multi-thread implementations of the lattice Boltzmann method on non-uniform grids for CPUs and GPUs

Massively Parallel Network Coding on GPUs

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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