high performance computing on graphics processing units: hgpu.org

Programming

hgpu.org » Programming » CUDA

High-throughput Bayesian network learning using heterogeneous multicore computers

Michael D. Linderman, Robert Bruggner, Vivek Athalye, Teresa H. Meng, Narges B. Asadi, Garry P. Nolan

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Tags: Algorithms, CUDA, GPU cluster, Mathematics, nVidia, nVidia GeForce GTX 285, Statistics, Tesla C1060, Tesla S1070

December 15, 2010 by hgpu

Integrative multicellular biological modeling: a case study of 3D epidermal development using GPU algorithms

Scott Christley, Briana Lee, Xing Dai, Qing Nie

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Tags: Biology, CUDA, nVidia, nVidia GeForce GTX 285

December 15, 2010 by hgpu

Hybrid of genetic algorithm and local search to solve MAX-SAT problem using nVidia CUDA framework

Asim Munawar, Mohamed Wahib, Masaharu Munetomo, Kiyoshi Akama

Tags: Algorithms, Computer science, CUDA, nVidia, Search, Tesla C1060

December 15, 2010 by hgpu

Genetic programming on graphics processing units

Denis Robilliard, Virginie Marion-Poty, Cyril Fonlupt

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce 8800 GTX, Package

December 15, 2010 by hgpu

Acceleration of cardiac tissue simulation with graphic processing units

Daisuke Sato, Yuanfang Xie, James Weiss, Zhilin Qu, Alan Garfinkel, Allen Sanderson

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Tags: CUDA, Medicine, nVidia, nVidia GeForce 8800 GT, nVidia GeForce 9800 GX2, ODEs, Ordinary differential equations, Partial differential equations, PDEs

December 15, 2010 by hgpu

Optimizing Monte Carlo radiosity on graphics hardware

J. Sanjurjo, M. Amor, M. Boo, R. Doallo, J. Casares

Tags: Computer science, CUDA, Monte Carlo simulation, nVidia, Optimization, Rendering

December 15, 2010 by hgpu

Scalable and highly parallel implementation of Smith-Waterman on graphics processing unit using CUDA

Ali Akoglu, Gregory Striemer

Tags: Bioinformatics, Biology, CUDA, nVidia, Sequence alignment, Smith-Waterman algorithm, Tesla C870

December 15, 2010 by hgpu

OpenMP to GPGPU: a compiler framework for automatic translation and optimization

Seyong Lee, Seung-Jai Min, and Rudolf Eigenman

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Tags: Computer science, CUDA, High-level Languages, nVidia, nVidia Quadro FX 5600, OpenMP, Programming techniques

December 15, 2010 by hgpu

Accelerating a three-dimensional finite-difference wave propagation code using GPU graphics cards

David Michea, Dimitri Komatitsch

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Tags: CUDA, Earth and Space Sciences, FDTD, Finite difference, Geoscience, GPU cluster, MPI, nVidia, nVidia GeForce 8800 GTX, Tesla S1070

December 15, 2010 by hgpu

gProximity: Hierarchical GPU-based Operations for Collision and Distance Queries

C. Lauterbach, Q. Mo, D. Manocha

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Tags: Algorithms, Collision detection, Computer science, CUDA, nVidia, nVidia GeForce GTX 285, Package

December 14, 2010 by hgpu

Fast Ray Sorting and Breadth-First Packet Traversal for GPU Ray Tracing

Kirill Garanzha, Charles Loop

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Tags: 3D Graphics and Realism, Computer science, CUDA, nVidia, nVidia GeForce GTX 285, Raytracing

December 14, 2010 by hgpu

Fast GPU-based Adaptive Tessellation with CUDA

Michael Schwarz, Marc Stamminger

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Tags: 3D Graphics and Realism, Computer science, CUDA, nVidia, nVidia GeForce 8800 GTS

December 14, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

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high performance computing on graphics processing units: hgpu.org

Programming

High-throughput Bayesian network learning using heterogeneous multicore computers

Integrative multicellular biological modeling: a case study of 3D epidermal development using GPU algorithms

Hybrid of genetic algorithm and local search to solve MAX-SAT problem using nVidia CUDA framework

Genetic programming on graphics processing units

Acceleration of cardiac tissue simulation with graphic processing units

Optimizing Monte Carlo radiosity on graphics hardware

Scalable and highly parallel implementation of Smith-Waterman on graphics processing unit using CUDA

OpenMP to GPGPU: a compiler framework for automatic translation and optimization

Accelerating a three-dimensional finite-difference wave propagation code using GPU graphics cards

gProximity: Hierarchical GPU-based Operations for Collision and Distance Queries

Fast Ray Sorting and Breadth-First Packet Traversal for GPU Ray Tracing

Fast GPU-based Adaptive Tessellation with CUDA

Recent source codes

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MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

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