high performance computing on graphics processing units: hgpu.org

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Accelerated protein structure comparison using TM-score-GPU

Ling-Hong Hung, Ram Samudrala

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Tags: ATI, ATI Radeon HD 5870, Bioinformatics, Biology, Clustering, OpenCL, Package

October 5, 2012 by hgpu

KERNELGEN – A Toolchain for Automatic GPU-centric Applications Porting

Dmitry Mikushin, Nicolas Likhogrud

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Tags: Computer science, CUDA, nVidia, OpenCL, Package, Portability, Tesla C2050

October 3, 2012 by hgpu

Charged particles constrained to a curved surface

Thomas Muller, Jorg Frauendiener

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Tags: CUDA, Electrostatics, nVidia, OpenGL, Package, Physics

September 20, 2012 by hgpu

Simulating spiking neural networks on GPU

Romain Brett

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Tags: Computer science, CUDA, Neural networks, nVidia, nVidia GeForce GTX 580, Package, Python, Review

September 19, 2012 by hgpu

Beauty And The Beast: Exploiting GPUs In Haskell

Alex Cole, Alistair McEwan, Geoffrey Mainland

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Tags: Computer science, CUDA, Haskell, nVidia, nVidia GeForce GTX 460, Package

September 19, 2012 by hgpu

Massive parallelization of combinatorial statistical genetics analyses porting machine learning methods on general purpose graphics processing units (GPU)

Tony Kam-Thong

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Tags: Biology, CUDA, Genetics, Machine learning, nVidia, nVidia GeForce GTX 295, nVidia GeForce GTX 580, Package, Thesis

September 16, 2012 by hgpu

Parallelize L-BFGS-B on the GPU

Yun Fei, Wenping Wang, Bin Wang

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Tags: Algorithms, Computer science, CUDA, Nonlinear optimization, nVidia, nVidia GeForce GTX 580, Package, Tessellation, Voronoi diagram

September 14, 2012 by hgpu

Dynamical heterogeneities as fingerprints of a backbone structure in Potts models

Ezequiel E. Ferrero, Federico Roma, Sebastian Bustingorry, Pablo M. Gleiser

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Tags: Condensed matter, CUDA, Monte Carlo simulation, Numerical simulation, nVidia, nVidia GeForce GTX 480, Package, Physics, Statistical Mechanics

September 12, 2012 by hgpu

A First Step Towards GPU-assisted Query Optimization

Max Heimel, Volker Markl

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Tags: Computer science, Databases, nVidia, nVidia GeForce GTX 460, OpenCL, Optimization, Package

September 11, 2012 by hgpu

GPU accelerated QTL detection

G. Chapuis, O. Filangi, J.M. Elsen, D. Lavenier, P. Le Roy

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Tags: Bioinformatics, Biology, Computer science, CUDA, nVidia, Package, Tesla C2050

September 11, 2012 by hgpu

CuNeuQuant: A CUDA Implementation of the NeuQuant Image Quantization Algorithm

David Bottisti, Liuva Mendez, Damian Dechev

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Tags: Algorithms, Computer vision, CUDA, Image processing, Neural networks, nVidia, nVidia GeForce 9800 GTX, Package

September 10, 2012 by hgpu

Mastering Software Variant Explosion for GPU Accelerators

Richard Membarth, Frank Hannig, Jurgen Teich, Mario Korner, Wieland Eckert

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Tags: ATI, ATI Radeon HD 5870, ATI Radeon HD 6970, Computer science, CUDA, Heterogeneous systems, Image processing, nVidia, nVidia Quadro FX 5800, OpenCL, Package, Tesla C2050

September 8, 2012 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Accelerated protein structure comparison using TM-score-GPU

KERNELGEN – A Toolchain for Automatic GPU-centric Applications Porting

Charged particles constrained to a curved surface

Simulating spiking neural networks on GPU

Beauty And The Beast: Exploiting GPUs In Haskell

Massive parallelization of combinatorial statistical genetics analyses porting machine learning methods on general purpose graphics processing units (GPU)

Parallelize L-BFGS-B on the GPU

Dynamical heterogeneities as fingerprints of a backbone structure in Potts models

A First Step Towards GPU-assisted Query Optimization

GPU accelerated QTL detection

CuNeuQuant: A CUDA Implementation of the NeuQuant Image Quantization Algorithm

Mastering Software Variant Explosion for GPU Accelerators

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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