high performance computing on graphics processing units: hgpu.org

Nicholas P. Bailey, Trond S. Ingebrigtsen, Jesper Schmidt Hansen, Arno A. Veldhorst, Lasse Bohling, Claire A. Lemarchand, Andreas E. Olsen, Andreas K. Bacher, Heine Larsen, Jeppe C. Dyre, Thomas B. Schroder

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Tags: Computational Physics, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 780 Ti, Package, Physics, Python

June 17, 2015 by hgpu

Automatic Selection of Sparse Matrix Representation on GPUs

Naser Sedaghati, Te Mu, Louis-Noel Pouchet, Srinivasan Parthasarathy, P. Sadayappan

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Tags: Computer science, CUDA, Machine learning, nVidia, nVidia GeForce GTX 580, Physics, Sparse matrix, Tesla K20, Tesla K40

June 14, 2015 by hgpu

Poisson-Boltzmann model for protein-surface electrostatic interactions and grid-convergence study using the PyGBe code

Christopher D. Cooper, Lorena A. Barba

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Tags: Biomolecules, Boltzmann equation, Computational Physics, CUDA, Electrostatics, nVidia, Package, Physics, Poisson Boltzmann, Python, Tesla C2075

June 14, 2015 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

A parallel algorithm for implicit depletant simulations

Adaptive Multi-GPU Exchange Monte Carlo for the 3D Random Field Ising Model

GPU computing with OpenCL to model 2D elastic wave propagation: exploring memory usage

Efficient Numerical Evaluation of Feynman Integral

Performance Analysis of a Particle-in-Cell Plasma Physics Code on Homogeneous and Heterogeneous HPC Systems

GPU phase-field lattice Boltzmann simulations of growth and motion of a binary alloy dendrite

Spectral Ewald Acceleration of Stokesian Dynamics for polydisperse suspensions

CPU and GPU Implementation of QCD by using OpenCL

Ebb: A DSL for Physical Simluation on CPUs and GPUs

RUMD: A general purpose molecular dynamics package optimized to utilize GPU hardware down to a few thousand particles

Automatic Selection of Sparse Matrix Representation on GPUs

Poisson-Boltzmann model for protein-surface electrostatic interactions and grid-convergence study using the PyGBe code

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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