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General purpose Molecular Dynamics Simulations on GPUs: Issues of Pair Forces and Scaling to large Clusters

Christian Trott, Lars Winterfeld

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Tags: Computational Physics, Condensed matter, CUDA, GPU cluster, Materials Science, Molecular dynamics, MPI, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 295, Package, Performance, Physics, Tesla C1060, Tesla S1070

November 9, 2010 by hgpu

SU(2) Lattice QCD Simulations on Fermi GPUs

Nuno Cardoso, Pedro Bicudo

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Tags: Computational Physics, CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 295, nVidia GeForce GTX 480, Package, Physics

November 9, 2010 by hgpu

Parallelizing the QUDA Library for Multi-GPU Calculations in Lattice Quantum Chromodynamics

Ronald Babich, Michael A. Clark, Balint Joo

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Tags: CUDA, GPU cluster, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce 8800 GTX, nVidia GeForce GTX 285, nVidia GeForce GTX 480, Package, Physics, QCD, Tesla C1060, Tesla C2050, Tesla C870

November 9, 2010 by hgpu

Rank k Cholesky Up/Down-dating on the GPU: gpucholmodV0.2

Christian Walder

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Tags: Algorithms, Computer science, CUDA, nVidia, Package, Tesla C2050

November 9, 2010 by hgpu

Hard Data on Soft Errors: A Large-Scale Assessment of Real-World Error Rates in GPGPU

Imran S. Haque, Vijay S. Pande

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Tags: Computer science, CUDA, Hardware Architecture, nVidia, nVidia GeForce 8800 GTX, nVidia GeForce 9500 GT, Package, Tesla C870

November 9, 2010 by hgpu

A framework for simulating and estimating the state and functional topology of complex dynamic geometric networks

Marius Buibas, Gabriel A. Silva

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Tags: Biological Physics, Condensed matter, CUDA, Disordered Systems and Neural Networks, Mathematical Physics, Neurons and Cognition, nVidia, Package, Physics, Tesla C1060

November 9, 2010 by hgpu

HONEI: A collection of libraries for numerical computations targeting multiple processor architectures

Danny van Dyk, Markus Geveler, Sven Mallach, Dirk Ribbrock, Dominik Goeddeke, Carsten Gutwenger

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Tags: Cell processor, Computer science, CUDA, Mathematical Software, Mixed precision, nVidia, nVidia GeForce 8800 GTX, Package

November 9, 2010 by hgpu

Fast Calculation of the Lomb-Scargle Periodogram Using Graphics Processing Units

R. H. D. Townsend

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Tags: Astrophysics, CUDA, Instrumentation and Methods for Astrophysics, nVidia, Package, Solar and Stellar Astrophysics, Tesla C1060

November 9, 2010 by hgpu

SIML: A Fast SIMD Algorithm for Calculating LINGO Chemical Similarities on GPUs and CPUs

Imran S. Haque, Vijay S. Pande, W. Patrick Walters

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Tags: Chemistry, CUDA, nVidia, nVidia GeForce GTS 250, OpenMP, Package, Tesla T10

November 9, 2010 by hgpu

High Performance Direct Gravitational N-body Simulations on Graphics Processing Units: An implementation in CUDA (thesis)

Jeroen Bedorf

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Tags: Astrophysics, CUDA, Gravitation, N-body simulation, nVidia, nVidia GeForce 8800 GTX, Package, Stellar dynamics

November 9, 2010 by hgpu

High Performance Direct Gravitational N-body Simulations on Graphics Processing Units

Simon P. Zwart, Robert Belleman, Peter Geldof

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Tags: Astrophysics, Cg, Gravitation, N-body simulation, nVidia, nVidia GeForce 8800 GTX, nVidia Quadro FX 1400, OpenGL, Package, Stellar dynamics

November 9, 2010 by hgpu

Gravitational tree-code on graphics processing units: implementation in CUDA

Evghenii Gaburov, Jeroen Bedorf, Simon P. Zwart

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Tags: Astrophysics, CUDA, Instrumentation and Methods for Astrophysics, nVidia, nVidia GeForce 8800 Ultra, Package, Physics

November 9, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

General purpose Molecular Dynamics Simulations on GPUs: Issues of Pair Forces and Scaling to large Clusters

SU(2) Lattice QCD Simulations on Fermi GPUs

Parallelizing the QUDA Library for Multi-GPU Calculations in Lattice Quantum Chromodynamics

Rank k Cholesky Up/Down-dating on the GPU: gpucholmodV0.2

Hard Data on Soft Errors: A Large-Scale Assessment of Real-World Error Rates in GPGPU

A framework for simulating and estimating the state and functional topology of complex dynamic geometric networks

HONEI: A collection of libraries for numerical computations targeting multiple processor architectures

Fast Calculation of the Lomb-Scargle Periodogram Using Graphics Processing Units

SIML: A Fast SIMD Algorithm for Calculating LINGO Chemical Similarities on GPUs and CPUs

High Performance Direct Gravitational N-body Simulations on Graphics Processing Units: An implementation in CUDA (thesis)

High Performance Direct Gravitational N-body Simulations on Graphics Processing Units

Gravitational tree-code on graphics processing units: implementation in CUDA

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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