high performance computing on graphics processing units: hgpu.org

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Implementation & Parallelisation of FDTD code for Electromagnetic Scattering

Deshpande Varadendra Ravindra

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Tags: Algorithms, CUDA, Electrodynamics, FDTD, Finite-difference time-domain, MPI, nVidia, OpenMPI, Tesla C2070, Thesis

July 18, 2014 by hgpu

A Hybrid Parallel Implementation of the Aho-Corasick and Wu-Manber Algorithms Using NVIDIA CUDA and MPI Evaluated on a Biological Sequence Database

Charalampos S. Kouzinopoulos, John-Alexander M. Assael, Themistoklis K. Pyrgiotis, Konstantinos G. Margaritis

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Tags: Algorithms, Computer science, CUDA, Databases, GPU cluster, MPI, nVidia, nVidia GeForce GT 240, Package, Tesla S1070

July 11, 2014 by hgpu

Massive Parallelism with GPUs for Centrality Ranking in Complex Networks

Frederico L. Cabral, Carla Osthoff, Rafael Nardes, Daniel Ramos

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Tags: Computer science, CUDA, GPU cluster, Graph theory, MPI, nVidia, Tesla K20

July 6, 2014 by hgpu

HAM – Heterogenous Active Messages for Efficient Offloading on the Intel Xeon Phi

Matthias Noack

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Tags: Computer science, Heterogeneous systems, Intel Xeon Phi, MPI

June 17, 2014 by hgpu

Synergia CUDA: GPU-accelerated accelerator modeling package

Q. Lu, J. Amundson

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Tags: CUDA, FFT, GPU cluster, MPI, nVidia, Package, Particle-in-cell methods, Physics, Tesla C1070, Tesla K20

June 17, 2014 by hgpu

Evaluating CP2K on Exascale Hardware: Intel Xeon Phi

Fiona Reid, Iain Bethune

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Tags: Chemistry, Intel Xeon Phi, Molecular dynamics, MPI, OpenMP

June 15, 2014 by hgpu

Scalable Lattice Boltzmann Solvers for CUDA GPU Clusters

Christian Obrecht, Frederic Kuznik, Bernard Tourancheau, Jean-Jacques Roux

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Tags: CUDA, Fluid dynamics, GPU cluster, Lattice Boltzmann model, MPI, nVidia, OpenMPI, Tesla M2070

June 15, 2014 by hgpu

GPPE: a GPU-based Parallel Processing Environment for Large Scale Concurrent Data Streams

Jianwei Cao, Qingkui Chen, Songlin Zhuang

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Tags: Cloud, Clustering, Computer science, CUDA, GPU cluster, H.264/AVC, MPI, nVidia, nVidia GeForce GTX 260, nVidia GeForce GTX 280, nVidia GeForce GTX 295, nVidia GeForce GTX 480

June 12, 2014 by hgpu

Tri-Hybrid Computational Fluid Dynamics on DOE’s Cray XK7, Titan

Aaron Vose, Brian Mitchell, John Levesque

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Tags: CUDA, Fluid dynamics, MPI, nVidia, OpenACC, Tesla K20

May 24, 2014 by hgpu

A GPU-Based Simulation Kernel within Heterogeneous Collaborative Computation on Large-Scale Artificial Society

Li Zhen, Qiuxiao Gang, Guo Gang, Chen Bin

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Tags: Computer science, CUDA, Heterogeneous systems, MPI, nVidia, Task scheduling, Tesla C2050

May 24, 2014 by hgpu

Petascale Application of a Coupled CPU-GPU Algorithm for Simulation and Analysis of Multiphase Flow Solutions in Porous Medium Systems

James E. McClure, Hao Wang, Jan F. Prins, Cass T. Miller, Wu-chun Feng

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Tags: Algorithms, CUDA, Fluid dynamics, Heterogeneous systems, Lattice Boltzmann model, MPI, nVidia, Tesla K20

May 23, 2014 by hgpu

A Tool for Interactive Parallelization

Ritu Arora, Julio Olaya, Madhav Gupta

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Tags: Computer science, CUDA, MPI, nVidia, Programming techniques

May 21, 2014 by hgpu

CLUEstering: a high-performance density-based clustering library for scientific computing

PyOMP: OpenMP for Python in Numba

PyOMP: Parallel programming for CPUs and GPUs with OpenMP and Python

GPPerf: Energy-Aware GPU Performance Prediction and Optimization Framework

Understanding GEMM Performance and Energy on NVIDIA Ada Lovelace: A Machine Learning-Based Analytical Approach

HiRep

Scaling SU(2) to 1000 GPUs using HiRep

Gaia AVU-GSR

Performance portability via C++ PSTL, SYCL, OpenMP, and HIP: the Gaia AVU-GSR case study

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

gpuPairHMM: High-speed Pair-HMM Forward Algorithm for DNA Variant Calling on GPUs

See all packages

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high performance computing on graphics processing units: hgpu.org

Implementation & Parallelisation of FDTD code for Electromagnetic Scattering

A Hybrid Parallel Implementation of the Aho-Corasick and Wu-Manber Algorithms Using NVIDIA CUDA and MPI Evaluated on a Biological Sequence Database

Massive Parallelism with GPUs for Centrality Ranking in Complex Networks

HAM – Heterogenous Active Messages for Efficient Offloading on the Intel Xeon Phi

Synergia CUDA: GPU-accelerated accelerator modeling package

Evaluating CP2K on Exascale Hardware: Intel Xeon Phi

Scalable Lattice Boltzmann Solvers for CUDA GPU Clusters

Tri-Hybrid Computational Fluid Dynamics on DOE’s Cray XK7, Titan

A GPU-Based Simulation Kernel within Heterogeneous Collaborative Computation on Large-Scale Artificial Society

Petascale Application of a Coupled CPU-GPU Algorithm for Simulation and Analysis of Multiphase Flow Solutions in Porous Medium Systems

A Tool for Interactive Parallelization

Recent source codes

tdg-benchs: benchmarks used to test the performance of taskgraph

SW#SYCL

LLOR: Automatic Repair of OpenMP Programs

Solomon: Simple Off-LOading Macros Orchestrating multiple Notations

CLUEstering: a high-performance density-based clustering library for scientific computing

PyOMP: OpenMP for Python in Numba

GPPerf: Energy-Aware GPU Performance Prediction and Optimization Framework

HiRep

Gaia AVU-GSR

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

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