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Best bang for your buck: GPU nodes for GROMACS biomolecular simulations

Carsten Kutzner, Szilard Pall, Martin Fechner, Ansgar Esztermann, Bert L. de Groot, Helmut Grubmuller

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Tags: Benchmarking, Biological Physics, Biomolecules, Computational Physics, Computer science, Molecular dynamics, Molecular simulation, MPI, nVidia, Package, Performance, Tesla K20, Tesla K40

July 6, 2015 by hgpu

Hetero-DB: Next Generation High-Performance Database Systems by Best Utilizing Heterogeneous Computing and Storage Resources

Kai Zhang, Feng Chen, Xiaoning Ding, Yin Huai, Rubao Lee, Tian Luo, Kaibo Wang, Yuan Yuan, Xiaodong Zhang

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Tags: Computer science, CUDA, Data parallelism, Databases, Heterogeneous systems, nVidia, nVidia GeForce GTX 680, OpenCL

July 6, 2015 by hgpu

Mega-KV: A Case for GPUs to Maximize the Throughput of In-Memory Key-Value Stores

Kai Zhang, Kaibo Wang, Yuan Yuan, Lei Guo, Rubao Lee, Xiaodong Zhang

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Tags: Computer science, CUDA, Data parallelism, Databases, nVidia, nVidia GeForce GTX 780, Package

July 6, 2015 by hgpu

Texture Cache Approximation on GPUs

Mark Sutherland, Joshua San Miguel, Natalie Enright Jerger

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 780, Performance

July 3, 2015 by hgpu

GPU phase-field lattice Boltzmann simulations of growth and motion of a binary alloy dendrite

T. Takaki, R. Rojas, M Ohno, T. Shimokawabe, T. Aoki

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Tags: Alloys, Condensed matter, CUDA, Lattice Boltzmann model, Materials Science, nVidia, Physics, Tesla K20

July 3, 2015 by hgpu

Parallel Sparse Coding for Seafloor Image Analysis

Genlang Chen, Chenggang Lai, Miaoqing Huang

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Tags: CUDA, Image processing, Intel Xeon Phi, Machine learning, nVidia, Tesla K20

July 3, 2015 by hgpu

High Performance Approximate Sort Algorithm Using GPUs

Jun Xiao, Hao Chen, Jianhua Sun

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 780, Sorting

July 3, 2015 by hgpu

Buffer overflow vulnerabilities in CUDA: a preliminary analysis

Andrea Miele

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX Titan Black, Security

July 1, 2015 by hgpu

Spectral Ewald Acceleration of Stokesian Dynamics for polydisperse suspensions

Mu Wang, John F. Brady

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Tags: Computational Physics, CUDA, Fluid dynamics, nVidia, nVidia GeForce GTX 680, Physics, Soft Condensed Matter

July 1, 2015 by hgpu

Heterogeneous Network Embedding via Deep Architectures

Shiyu Chang, Wei Han, Jiliang Tang, Guo-Jun Qi, Charu C. Aggarwal, Thomas S. Huang

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Tags: Computer science, CUDA, Data mining, Deep learning, Machine learning, nVidia, Tesla K40

July 1, 2015 by hgpu

AccFFT: A library for distributed-memory FFT on CPU and GPU architectures

Amir Gholami, Judith Hill, Dhairya Malhotra, George Biros

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Tags: Algorithms, Computer science, CUDA, FFT, MPI, nVidia, OpemMP, Package, Tesla K20

June 30, 2015 by hgpu

CPU and GPU Implementation of QCD by using OpenCL

J. Sa, B. Noh, H. Kim, D. Choi, S. Lee, Y. Chung, D. Kim, H. Jang

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Tags: High Energy Physics - Lattice, nVidia, nVidia GeForce GTX 550, OpenCL, Physics, QCD

June 30, 2015 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

See all packages

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high performance computing on graphics processing units: hgpu.org

Best bang for your buck: GPU nodes for GROMACS biomolecular simulations

Hetero-DB: Next Generation High-Performance Database Systems by Best Utilizing Heterogeneous Computing and Storage Resources

Mega-KV: A Case for GPUs to Maximize the Throughput of In-Memory Key-Value Stores

Texture Cache Approximation on GPUs

GPU phase-field lattice Boltzmann simulations of growth and motion of a binary alloy dendrite

Parallel Sparse Coding for Seafloor Image Analysis

High Performance Approximate Sort Algorithm Using GPUs

Buffer overflow vulnerabilities in CUDA: a preliminary analysis

Spectral Ewald Acceleration of Stokesian Dynamics for polydisperse suspensions

Heterogeneous Network Embedding via Deep Architectures

AccFFT: A library for distributed-memory FFT on CPU and GPU architectures

CPU and GPU Implementation of QCD by using OpenCL

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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