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Improving the Mapping of Smith-Waterman Sequence Database Searches onto CUDA-Enabled GPUs

Liang-Tsung Huang, Chao-Chin Wu, Lien-Fu Lai, Yun-Ju Li

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Tags: Bioinformatics, Biology, CUDA, Databases, nVidia, Sequence alignment, Smith-Waterman algorithm, Tesla C1060, Tesla K20

June 30, 2015 by hgpu

Enhancing Fluid Modeling with Turbulence and Acceleration

Chen Fan

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Tags: CUDA, Fluid dynamics, Lattice Boltzmann model, nVidia, Tesla C1060, Thesis

April 8, 2015 by hgpu

Flexible, Fast and Accurate Sequence Alignment Profiling on GPGPU with PaSWAS

Sven Warris, Feyruz Yalcin, Katherine J. L. Jackson, Jan Peter Nap

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 295, Package, Sequence alignment, Smith-Waterman algorithm, Tesla C1060

April 7, 2015 by hgpu

NMF-mGPU: non-negative matrix factorization on multi-GPU systems

Edgardo Mejia-Roa, Daniel Tabas-Madrid, Javier Setoain, Carlos Garcia, Francisco Tirado, Alberto Pascual-Montano

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Tags: Algorithms, Bioinformatics, Biology, CUDA, Factorization, GPU cluster, MPI, Nonnegative matrix factorization, nVidia, Package, Tesla C1060

February 19, 2015 by hgpu

CAVE-CL: An OpenCL version of the package for detection and quantitative analysis of internal cavities in a system of overlapping balls: application to proteins

Jan Busa Jr., Jan Busa, Shura Hayryan, Chin-Kun Hu, Ming-Chya Wu

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Tags: Algorithms, Biology, Computer physics, Fortran, nVidia, nVidia GeForce GTX 470, OpenCL, Physics, Tesla C1060

February 10, 2015 by hgpu

Optimized Data Transfers Based on the OpenCL Event Management Mechanism

Hiroyuki Takizawa, Shoichi Hirasawa, Makoto Sugawara, Isaac Gelado, Hiroaki Kobayashi, Wen-mei W. Hwu

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Tags: Computer science, nVidia, nVidia GeForce GTX Titan, OpenCL, Programming techniques, Tesla C1060, Tesla C2070

February 1, 2015 by hgpu

A Novel Computational Model for GPUs with Applications to Efficient Algorithms

Atsushi Koike, Kunihiko Sadakane

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Tags: Algorithms, Computer science, CUDA, nVidia, Sorting, Tesla C1060, Tesla K20

January 15, 2015 by hgpu

Identification and Elimination of Platform-Specific Code Smells in High Performance Computing Applications

Chunyan Wang, Shoichi Hirasawa, Hiroyuki Takizawa, Hiroaki Kobayashi

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Tags: Computer science, CUDA, nVidia, OpenACC, OpenCL, Tesla C1060, Tesla C2070, Tesla K20

January 15, 2015 by hgpu

Graphics Processing Unit-Based Computer-Aided Design Algorithms for Electronic Design Automation

Yiding Han

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Tags: Algorithms, Computer science, CUDA, Electronic design automation, nVidia, nVidia GeForce GTS 250, Tesla C1060, Thesis

November 5, 2014 by hgpu

Performance Modeling, Optimization, and Characterization on Heterogeneous Architectures

Lokendra Singh Panwar

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Tags: ATI, ATI Radeon HD 5870, ATI Radeon HD 7970, Computational Complexity, Computer science, CUDA, Finite difference, GPU cluster, Heterogeneous systems, MPI, nVidia, OpenCL, Seismology, Tesla C1060, Tesla C2050, Thesis

October 29, 2014 by hgpu

Optimization Techniques for Mapping Algorithms and Applications onto CUDA GPU Platforms and CPU-GPU Heterogeneous Platforms

Jing Wu

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Tags: Computer science, CUDA, FFT, Heterogeneous systems, Laplace and Poisson equation, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 480, Poisson equation, Tesla C1060, Tesla C2050, Thesis

October 22, 2014 by hgpu

Multi-GPU Based Lattice Boltzmann Method for Hemodynamic Simulation in Patient-Specific Cerebral Aneurysm

Changsheng Huang, Baochang Shi, Zhaoli Guo, Zhenhua Chai

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Tags: Algorithms, CUDA, Fluid dynamics, Lattice Boltzmann model, MPI, nVidia, Package, Tesla C1060, Tesla K20

October 16, 2014 by hgpu

CLUEstering: a high-performance density-based clustering library for scientific computing

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high performance computing on graphics processing units: hgpu.org

Improving the Mapping of Smith-Waterman Sequence Database Searches onto CUDA-Enabled GPUs

Enhancing Fluid Modeling with Turbulence and Acceleration

Flexible, Fast and Accurate Sequence Alignment Profiling on GPGPU with PaSWAS

NMF-mGPU: non-negative matrix factorization on multi-GPU systems

CAVE-CL: An OpenCL version of the package for detection and quantitative analysis of internal cavities in a system of overlapping balls: application to proteins

Optimized Data Transfers Based on the OpenCL Event Management Mechanism

A Novel Computational Model for GPUs with Applications to Efficient Algorithms

Identification and Elimination of Platform-Specific Code Smells in High Performance Computing Applications

Graphics Processing Unit-Based Computer-Aided Design Algorithms for Electronic Design Automation

Performance Modeling, Optimization, and Characterization on Heterogeneous Architectures

Optimization Techniques for Mapping Algorithms and Applications onto CUDA GPU Platforms and CPU-GPU Heterogeneous Platforms

Multi-GPU Based Lattice Boltzmann Method for Hemodynamic Simulation in Patient-Specific Cerebral Aneurysm

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