high performance computing on graphics processing units: hgpu.org

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A combined MPI-CUDA parallel solution of linear and nonlinear Poisson-Boltzmann equation

Jose Colmenares, Antonella Galizia, Jesus Ortiz, Andrea Clematis, Walter Rocchia

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Tags: Algorithms, Biology, Boltzmann equation, CUDA, Electrostatic potential, Electrostatics, Heterogeneous systems, Macromolecule, MPI, nVidia, nVidia GeForce GTX 580, Poisson Boltzmann, Tesla C2075

May 21, 2014 by hgpu

StarPU-MPI: Task Programming over Clusters of Machines Enhanced with Accelerators

Cedric Augonnet, Olivier Aumage, Nathalie Furmento, Samuel Thibault, Raymond Namyst

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Tags: Computer science, CUDA, Heterogeneous systems, MPI, nVidia, OpenCL, Tesla M2070

May 18, 2014 by hgpu

Hierarchical Transparent Programming for Heterogeneous Computing

Yuri Torres de la Sierra

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Tags: Computer science, CUDA, Heterogeneous systems, MPI, nVidia, nVidia GeForce GTX 480, nVidia GeForce GTX 680, OpenCL, Thesis

May 17, 2014 by hgpu

Enabling CP2K Application for Exascale Computing with Accelerators using OpenACC and OpenCL

Mariusz Uchronski, Agnieszka Kwiecien, Marcin Gebarowski

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Tags: ATI, ATI Radeon HD 6950, Chemistry, CUDA, Matrix multiplication, Molecular simulation, MPI, nVidia, OpenACC, OpenCL, Sparse matrix, Tesla M2075

May 16, 2014 by hgpu

Multi-GPGPU Cellular Automata Simulations using OpenACC

Sebastian Szkoda, Zbigniew Koza, Mateusz Tykierko

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Tags: Algorithms, Cellular automata, CUDA, Fluid dynamics, MPI, nVidia, nVidia GeForce GTX 480, OpenACC, Tesla C2090, Tesla K20, Tesla M2090

May 15, 2014 by hgpu

Cluster-Level Tuning of a Shallow Water Equation Solver on the Intel MIC Architecture

Andrey Vladimirov, Cliff Addison

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Tags: cfd, Fluid dynamics, intel mic, Intel Xeon Phi, MPI, OpenMP

May 13, 2014 by Andrey Vladimirov

Integrating multi-threading and accelerators into DUNE-ISTL

Steffen Muthing, Dirk Ribbrock, Dominik Goddeke

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Tags: Computer science, CUDA, Heterogeneous systems, Linear Algebra, MPI, nVidia, Partial differential equations, PDEs, Tesla C2070

April 25, 2014 by hgpu

3D Hydrodynamic Simulation of Classical Nova Explosions

Coleman Kendrick

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Tags: Astrophysics, ATI, ATI Radeon HD 7970, Fluid dynamics, hydrodynamics, MPI, nVidia, nVidia GeForce GTX 580, OpenCL

April 9, 2014 by hgpu

A Study on Efficient Application Mapping on Parallel Computing Accelerators

Keisuke Dohi

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Tags: Algorithms, Computer science, CUDA, FDTD, Finite-difference time-domain, FPGA, MPI, nVidia, nVidia GeForce GTX 295, Smith-Waterman algorithm, Thesis

April 7, 2014 by hgpu

Acceleration of a Full-scale Industrial CFD Application with OP2

Istvan Z. Reguly, Gihan R. Mudalige, Carlo Bertolli, Michael B. Giles, Adam Betts, Paul H. J. Kelly, David Radford

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Tags: Computer science, CUDA, Fluid dynamics, MPI, nVidia, Performance, Tesla K20

April 7, 2014 by hgpu

Petascale computations for Large-scale Atomic and Molecular collisions

Brendan M McLaughlin, Connor P Ballance

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Tags: BLAS, Computational Physics, Computer science, CUDA, Fortran, Molecular simulation, MPI, nVidia, Tesla K20

April 4, 2014 by hgpu

Interpolated pressure laws in two-fluid simulations and hyperbolicity

Philippe Helluy, Jonathan Jung

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Tags: Fluid dynamics, Fluid simulation, MPI, nVidia, OpenCL, Tesla K20

March 14, 2014 by hgpu

CLUEstering: a high-performance density-based clustering library for scientific computing

PyOMP: OpenMP for Python in Numba

PyOMP: Parallel programming for CPUs and GPUs with OpenMP and Python

GPPerf: Energy-Aware GPU Performance Prediction and Optimization Framework

Understanding GEMM Performance and Energy on NVIDIA Ada Lovelace: A Machine Learning-Based Analytical Approach

HiRep

Scaling SU(2) to 1000 GPUs using HiRep

Gaia AVU-GSR

Performance portability via C++ PSTL, SYCL, OpenMP, and HIP: the Gaia AVU-GSR case study

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

gpuPairHMM: High-speed Pair-HMM Forward Algorithm for DNA Variant Calling on GPUs

See all packages

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high performance computing on graphics processing units: hgpu.org

A combined MPI-CUDA parallel solution of linear and nonlinear Poisson-Boltzmann equation

StarPU-MPI: Task Programming over Clusters of Machines Enhanced with Accelerators

Hierarchical Transparent Programming for Heterogeneous Computing

Enabling CP2K Application for Exascale Computing with Accelerators using OpenACC and OpenCL

Multi-GPGPU Cellular Automata Simulations using OpenACC

Cluster-Level Tuning of a Shallow Water Equation Solver on the Intel MIC Architecture

Integrating multi-threading and accelerators into DUNE-ISTL

3D Hydrodynamic Simulation of Classical Nova Explosions

A Study on Efficient Application Mapping on Parallel Computing Accelerators

Acceleration of a Full-scale Industrial CFD Application with OP2

Petascale computations for Large-scale Atomic and Molecular collisions

Interpolated pressure laws in two-fluid simulations and hyperbolicity

Recent source codes

tdg-benchs: benchmarks used to test the performance of taskgraph

SW#SYCL

LLOR: Automatic Repair of OpenMP Programs

Solomon: Simple Off-LOading Macros Orchestrating multiple Notations

CLUEstering: a high-performance density-based clustering library for scientific computing

PyOMP: OpenMP for Python in Numba

GPPerf: Energy-Aware GPU Performance Prediction and Optimization Framework

HiRep

Gaia AVU-GSR

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

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