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SW# – GPU enabled exact alignments on genome scale

Matija Korpar, Mile Sikic

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Tags: Bioinformatics, Biology, Computer science, CUDA, nVidia, nVidia GeForce GTX 560, nVidia GeForce GTX 570, nVidia GeForce GTX 690, Package, Sequence alignment, Smith-Waterman algorithm

April 23, 2013 by hgpu

GPU-based Implementation of 128-bit Secure Eta Pairing Over a Binary Field

Utsab Bose, Anup Kumar Bhattacharya, Abhijit Das

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Tags: Algorithms, Computer science, CUDA, Elliptic curves, nVidia, nVidia GeForce GTX 480, Security, Tesla C2050

April 22, 2013 by hgpu

On the Efficacy of GPU-Integrated MPI for Scientific Applications

Ashwin M. Aji, Lokendra S. Panwar, Feng Ji, Milind Chabbi, Karthik Murthy, Pavan Balaji, Keith R. Bisset, James Dinan, Wu-chun Feng, John Mellor-Crummey, Xiaosong May, Rajeev Thakur

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Tags: Computer science, CUDA, GPU cluster, Heterogeneous systems, MPI, nVidia, Optimization, Seismology, Tesla M2050

April 22, 2013 by hgpu

A General-Purpose GPU Reservoir Computer

Tureiti Keith

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Tags: Computer science, CUDA, Neural networks, nVidia, nVidia GeForce GTX 480, Thesis

April 22, 2013 by hgpu

Programming Models and Runtimes for Heterogeneous Systems

Max Grossman

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Tags: Computer science, CUDA, Heterogeneous systems, nVidia, nVidia GeForce GTX 480, Tesla C2050, Tesla M2050, Thesis

April 22, 2013 by hgpu

Connecting Architecture, Fitness, Optimizations and Performance using an Anisotropic Diffusion Filter

Sumedh Naik

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Tags: ATI Radeon HD 5870, Computer science, CUDA, Filtering, Image processing, MPI, nVidia, OpenCL, Tesla C2050, Thesis

April 22, 2013 by hgpu

Fast Makespan Estimation for GPU Threads on a Single Streaming Multiprocessor

Kostiantyn Berezovskyi, Konstantinos Bletsas, Stefan M. Petters

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Tags: Computer science, CUDA, Metaheuristics, nVidia, nVidia GeForce GTX 680, PTX, Timing analysis

April 22, 2013 by hgpu

Use NVIDIA CUDA technology to create genetic algorithms with extensive population

Maciej Kolomycki

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Tags: Algorithms, Computer science, CUDA, Genetic programming, nVidia, nVidia GeForce GT 540 M, nVidia GeForce GTX 460

April 22, 2013 by hgpu

GPGPU Based Non-photorealistic Rendering of Volume Data

Anca Morar, Florica Moldoveanu, Victor Asavei, Lucian Petrescu, Alin Moldoveanu, Alexandru Egner

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Tags: Algorithms, Computer science, Computer vision, CUDA, nVidia, nVidia GeForce GT 230 M, Rendering, Visualization

April 22, 2013 by hgpu

GPU-SD and DPD Parallelization for Gromacs tools for molecular dynamics simulations

Nicolae Goga, Siewert Marrink, Ruxandra Cioromela, Florica Moldoveanu

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Tags: Algorithms, Bioinformatics, Biology, Chemistry, CUDA, Molecular dynamics, nVidia, nVidia GeForce 9600 GT

April 21, 2013 by hgpu

Parallel Sequential Monte Carlo for Efficient Density Combination: The Deco Matlab Toolbox

Roberto Casarin, Stefano Grassi, Francesco Ravazzolo, H. K. Van Dijk

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Tags: Bayesian, Computer science, CUDA, nVidia, nVidia Quadro K 2000 M

April 21, 2013 by hgpu

You Can Type, but You Can’t Hide: A Stealthy GPU-based Keylogger

Evangelos Ladakis, Lazaros Koromilas, Giorgos Vasiliadis, Michalis Polychronakis, Sotiris Ioannidis

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GT 630, nVidia GeForce GTX 480, Security

April 19, 2013 by hgpu

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Accelerating a Linear Programming Algorithm on AMD GPUs

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

kvcached: Elastic KV cache for dynamic GPU sharing and efficient multi-LLM inference

Towards Efficient and Practical GPU Multitasking in the Era of LLM

Bandicoot: C++ library for GPU accelerated linear algebra

Bandicoot: A Templated C++ Library for GPU Linear Algebra

Luthier: Bridging Auto-Tuning and Vendor Libraries for Efficient Deep Learning Inference

Fused Kernel Library (FKL)

The Fused Kernel Library: A C++ API to Develop Highly-Efficient GPU Libraries

GPUHammer: Rowhammer Attacks on GPU Memories are Practical

Block: Balance Loader of LLM Serving with Context, Knowledge and Predictive Scheduling

Block: Balancing Load in LLM Serving with Context, Knowledge and Predictive Scheduling

SIGMo: Scalable Isomorphism Graph Matching on GPUs

SIGMo: High-Throughput Batched Subgraph Isomorphism on GPUs for Molecular Matching

DGEMM without FP64 Arithmetic - using FP64 Emulation and FP8 Tensor Cores with Ozaki Scheme

DGEMM without FP64 Arithmetic – using FP64 Emulation and FP8 Tensor Cores with Ozaki Scheme

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high performance computing on graphics processing units: hgpu.org

SW# – GPU enabled exact alignments on genome scale

GPU-based Implementation of 128-bit Secure Eta Pairing Over a Binary Field

On the Efficacy of GPU-Integrated MPI for Scientific Applications

A General-Purpose GPU Reservoir Computer

Programming Models and Runtimes for Heterogeneous Systems

Connecting Architecture, Fitness, Optimizations and Performance using an Anisotropic Diffusion Filter

Fast Makespan Estimation for GPU Threads on a Single Streaming Multiprocessor

Use NVIDIA CUDA technology to create genetic algorithms with extensive population

GPGPU Based Non-photorealistic Rendering of Volume Data

GPU-SD and DPD Parallelization for Gromacs tools for molecular dynamics simulations

Parallel Sequential Monte Carlo for Efficient Density Combination: The Deco Matlab Toolbox

You Can Type, but You Can’t Hide: A Stealthy GPU-based Keylogger

Recent source codes

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

kvcached: Elastic KV cache for dynamic GPU sharing and efficient multi-LLM inference

Bandicoot: C++ library for GPU accelerated linear algebra

Luthier: Bridging Auto-Tuning and Vendor Libraries for Efficient Deep Learning Inference

Fused Kernel Library (FKL)

GPUHammer: Rowhammer Attacks on GPU Memories are Practical

Block: Balance Loader of LLM Serving with Context, Knowledge and Predictive Scheduling

SIGMo: Scalable Isomorphism Graph Matching on GPUs

DGEMM without FP64 Arithmetic - using FP64 Emulation and FP8 Tensor Cores with Ozaki Scheme

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