high performance computing on graphics processing units: hgpu.org

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Data-parallel algorithms for large-scale real-time simulation of the cellular potts model on graphics processing units

Jose Juan Tapia, Roshan D'Souza

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Tags: Biophysics, CUDA, Data Structures and Algorithms, nVidia, nVidia GeForce GTX 280, OpenGL, Physics, Programming techniques

April 9, 2011 by hgpu

A Parallel Gibbs Sampling Algorithm for Motif Finding on GPU

Linbin Yu, Yun Xu

Tags: Bioinformatics, Biology, CUDA, nVidia, Sequence matching

April 9, 2011 by hgpu

Parallel Dense Gauss-Seidel Algorithm on Many-Core Processors

H. Courtecuisse, J. Allard

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Source codes

Tags: Algorithms, Computer science, CUDA, Medicine, nVidia, nVidia GeForce GTX 280, Package, Physics-based simulation, Surgical simulation

April 8, 2011 by hgpu

Optimize or Wait? Using llc Fast-Prototyping Tool to Evaluate CUDA Optimizations

Ruyman Reyes, Francisco de Sande

Tags: Computer science, CUDA, nVidia, Optimization

April 8, 2011 by hgpu

High-Speed Implementations of Block Cipher ARIA Using Graphics Processing Units

Yongjin Yeom, Yongkuk Cho, Moti Yung

Tags: Block Ciphers, Computer science, CUDA, Hardware Architecture, nVidia, nVidia GeForce 8800 GTS, OpenGL, Security

April 8, 2011 by hgpu

Record Setting Software Implementation of DES Using CUDA

G. Agosta, A. Barenghi, F. De Santis, G. Pelosi

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 250, nVidia GeForce GTX 260, nVidia GeForce GTX 275, nVidia GeForce GTX 285, nVidia GeForce GTX 295, Security

April 8, 2011 by hgpu

On accelerating iterative algorithms with CUDA: A case study on Conditional Random Fields training algorithm for biological sequence alignment

Zhihui Du, Zhaoming Yin, Wenjie Liu, D. Bader

Tags: Bioinformatics, Biology, CUDA, nVidia, Sequence alignment

April 8, 2011 by hgpu

Program Optimization of Array-Intensive SPEC2k Benchmarks on Multithreaded GPU Using CUDA and Brook+

Guibin Wang, Tao Tang, Xudong Fang, Xiaoguang Ren

Tags: Benchmarking, Brook, Computer science, CUDA, nVidia, Performance

April 8, 2011 by hgpu

CANSCID-CUDA

Michael Steffen, Veerendra Allada, Phillip Jones and Joseph Zambreno

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Tags: Computer science, CUDA, nVidia, Python, String matching, Tesla

April 8, 2011 by hgpu

High throughput multiple-precision GCD on the CUDA architecture

N. Fujimoto

Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 285, Security

April 7, 2011 by hgpu

Scalability of Higher-Order Discontinuous Galerkin FEM Computations for Solving Electromagnetic Wave Propagation Problems on GPU Clusters

Nico Godel, Nigel Nunn, Tim Warburton, Markus Clemens

Tags: CUDA, Electrodynamics, Finite element method, GPU cluster, nVidia

April 7, 2011 by hgpu

Using GPU to Accelerate Cache Simulation

Wan Han, Gao Xiaopeng, Wang Zhiqiang, Li Yi

Tags: Algorithms, Computer science, CUDA, Memory, nVidia, Optimization

April 7, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Data-parallel algorithms for large-scale real-time simulation of the cellular potts model on graphics processing units

A Parallel Gibbs Sampling Algorithm for Motif Finding on GPU

Parallel Dense Gauss-Seidel Algorithm on Many-Core Processors

Optimize or Wait? Using llc Fast-Prototyping Tool to Evaluate CUDA Optimizations

High-Speed Implementations of Block Cipher ARIA Using Graphics Processing Units

Record Setting Software Implementation of DES Using CUDA

On accelerating iterative algorithms with CUDA: A case study on Conditional Random Fields training algorithm for biological sequence alignment

Program Optimization of Array-Intensive SPEC2k Benchmarks on Multithreaded GPU Using CUDA and Brook+

CANSCID-CUDA

High throughput multiple-precision GCD on the CUDA architecture

Scalability of Higher-Order Discontinuous Galerkin FEM Computations for Solving Electromagnetic Wave Propagation Problems on GPU Clusters

Using GPU to Accelerate Cache Simulation

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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