high performance computing on graphics processing units: hgpu.org

Daniel L. Ayres, Aaron Darling, Derrick J. Zwickl, Peter Beerli, Mark T. Holder, Paul O. Lewis, John P. Huelsenbeck, Fredrik Ronquist, David L. Swofford, Michael P. Cummings, Andrew Rambaut, Marc A. Suchard

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Tags: Bayesian, Bioinformatics, Biology, CUDA, Genetics, nVidia, nVidia GeForce GTX 580

October 25, 2011 by hgpu

gpustats: GPU Library for Statistical Computing in Python

Andrew Cron, Wes McKinney

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Tags: Algorithms, Bayesian, Code generation, CUDA, Mathematics, nVidia, nVidia GeForce GTS 250, OpenCL, Package, Probability, Python, Statistics

October 13, 2011 by hgpu

A Generic Approach to Topic Models

Gregor Heinrich

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Tags: Algorithms, Bayesian, Computer science

September 16, 2011 by hgpu

Wavelet Model-based Stereo for Fast, Robust Face Reconstruction

Alan Brunton, Jochen Lang, Eric Dubois, Chang Shu

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Tags: Algorithms, Bayesian, Cloud, Computer science, Computer vision, CUDA, GLSL, nVidia, OpenGL, Wavelet

July 23, 2011 by hgpu

Parallel grid-based recursive Bayesian estimation using GPU for real-time autonomous navigation

Tomonari Furukawa, Benjamin Lavis, Hugh F. Durrant-Whyte

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Tags: Bayesian, Computer science, nVidia, nVidia GeForce 8800 GTS

May 3, 2011 by hgpu

Bridging the GPGPU-FPGA efficiency gap

Christopher W. Fletcher, Ilia A. Lebedev, Narges B. Asadi, Daniel R. Burke, John Wawrzynek

Tags: Algorithms, Bayesian, Computer science, FPGA, Heterogeneous systems, nVidia, OpenCL

March 22, 2011 by hgpu

MrBayes on a Graphics Processing Unit

Jianfu Zhou, Xiaoguang Liu, Douglas S. Stones, Qiang Xie, Gang Wang

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Tags: Bayesian, Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 480, Package

March 18, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Belief Propagation by Message Passing in Junction Trees: Computing Each Message Faster Using GPU Parallelization

Turbo Bayesian Compressed Sensing

cudaBayesreg: Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis

Acceleration Methods for Bayesian Network Sampling

Exploring Many-Core Design Templates for FPGAs and ASICs

BEAGLE: an Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

gpustats: GPU Library for Statistical Computing in Python

A Generic Approach to Topic Models

Parallel grid-based recursive Bayesian estimation using GPU for real-time autonomous navigation

Bridging the GPGPU-FPGA efficiency gap

MrBayes on a Graphics Processing Unit

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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