high performance computing on graphics processing units: hgpu.org

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Sequence alignment with GPU: Performance and design challenges

Gregory M. Striemer, Ali Akoglu

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Tags: Bioinformatics, Biology, Computational biology, Computer science, CUDA, nVidia, Package, Sequence alignment, Smith-Waterman algorithm, Tesla C870

October 27, 2010 by hgpu

GPU-Quicksort: A practical Quicksort algorithm for graphics processors

Daniel Cederman, Philippas Tsigas

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Tags: Algorithms, Computer science, CUDA, Data Structures and Algorithms, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce 8800 GTX, Package, Sorting

October 27, 2010 by hgpu

GPU accelerated pathfinding

Avi Bleiweiss

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Tags: Artificial intelligence, Computer science, CUDA, nVidia, nVidia GeForce 8800 GT, nVidia GeForce GTX 280, Presentation, Search strategies

October 27, 2010 by hgpu

ACEMD: Accelerating Biomolecular Dynamics in the Microsecond Time Scale

M. J. Harvey, G. Giupponi, G. De Fabritiis

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Tags: Biological Physics, Chemistry, Computational Physics, CUDA, GPU cluster, Molecular dynamics, nVidia, nVidia GeForce GTX 280, Package, Physics, Tesla C1060

October 27, 2010 by hgpu

Simulating spin models on GPU

Martin Weigel

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Tags: CUDA, Ising model, Monte Carlo simulation, nVidia, Package, Physics, Statistical Mechanics, Tesla C1060

October 27, 2010 by hgpu

GPU implementation of JPEG XR

Ming C. Che, Jie Liang

Tags: Algorithms, Computer science, CUDA, Image processing, nVidia

October 27, 2010 by hgpu

Monte Carlo integration on GPU

J. Kanzaki

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Tags: Computational Physics, CUDA, High Energy Physics - Experiment, High Energy Physics - Phenomenology, Monte Carlo integration, nVidia, nVidia GeForce GTX 285, Package, Physics

October 27, 2010 by hgpu

Computational advances in gravitational microlensing: a comparison of CPU, GPU, and parallel, large data codes

N. F. Bate, C. J. Fluke, B. R. Barsdell, H. Garsden, G. F. Lewis

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Tags: Astrophysics, CUDA, Gravitational lensing, Instrumentation and Methods for Astrophysics, nVidia, Tesla S1070

October 27, 2010 by hgpu

Multi-GPU accelerated multi-spin Monte Carlo simulations of the 2D Ising model

Benjamin Block,Peter Virnau,Tobias Preis

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Tags: CUDA, GPU cluster, Ising model, Monte Carlo simulation, nVidia, Package, Physics, Tesla C1060

October 27, 2010 by hgpu

Optimization principles and application performance evaluation of a multithreaded GPU using CUDA

Shane Ryoo, Christopher I. Rodrigues, Sara S. Baghsorkhi, Sam S. Stone, David B. Kirk, Wen-mei W. Hwu

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Tags: Computer science, CUDA, High-level Languages, nVidia, nVidia GeForce 8800 GTX, Performance, Programming techniques

October 27, 2010 by hgpu

A GPU based real-time software correlation system for the Murchison Widefield Array prototype

Randall B. Wayth,Lincoln J. Greenhill,Frank H. Briggs

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Tags: Astrophysics, CUDA, Instrumentation and Methods for Astrophysics, nVidia, nVidia GeForce 8800 GTS, nVidia GeForce 8800 GTX, Signal processing, Tesla C1060

October 27, 2010 by hgpu

Using graphics devices in reverse: GPU-based Image Processing and Computer Vision

James Fung,Steve Mann

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Tags: Computer science, Computer vision, CUDA, Image processing, nVidia, nVidia Quadro FX 5600

October 27, 2010 by hgpu

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

Faial: finds bugs in CUDA kernels

Sound and Partially-Complete Static Analysis of Data-Races in GPU Programs

Effects of OpenCL-Based Parallelization Methods on Explicit Numerical Methods to Solve the Heat Equation

Intel® SHMEM: Device initiated shared memory based communication library

Intel(R) SHMEM: GPU-initiated OpenSHMEM using SYCL

2domination

HPC acceleration of large (min, +) matrix products to compute domination-type parameters in graphs

miniLB: Lattice Botlzmann miniapp w/SYCL

miniLB: A Performance Portability Study of Lattice-Boltzmann Simulations

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high performance computing on graphics processing units: hgpu.org

Sequence alignment with GPU: Performance and design challenges

GPU-Quicksort: A practical Quicksort algorithm for graphics processors

GPU accelerated pathfinding

ACEMD: Accelerating Biomolecular Dynamics in the Microsecond Time Scale

Simulating spin models on GPU

GPU implementation of JPEG XR

Monte Carlo integration on GPU

Computational advances in gravitational microlensing: a comparison of CPU, GPU, and parallel, large data codes

Multi-GPU accelerated multi-spin Monte Carlo simulations of the 2D Ising model

Optimization principles and application performance evaluation of a multithreaded GPU using CUDA

A GPU based real-time software correlation system for the Murchison Widefield Array prototype

Using graphics devices in reverse: GPU-based Image Processing and Computer Vision

Recent source codes

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

EnergyUCB-Bandit

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

Faial: finds bugs in CUDA kernels

Effects of OpenCL-Based Parallelization Methods on Explicit Numerical Methods to Solve the Heat Equation

Intel® SHMEM: Device initiated shared memory based communication library

2domination

miniLB: Lattice Botlzmann miniapp w/SYCL

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