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Protein alignment algorithms with an efficient backtracking routine on multiple GPUs

Jacek Blazewicz, Wojciech Frohmberg, Michal Kierzynka, Erwin Pesch, Pawel Wojciechowski

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 480, Package, Sequence alignment, Tesla S1070

June 21, 2011 by hgpu

Fast, parallel, GPU-based construction of space filling curves and octrees

Prekshu Ajmera, Rhushabh Goradia, Sharat Chandran, Srinivas Aluru

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce 8800, Visualization

June 21, 2011 by hgpu

A Scalable End-to-End Optimized Real-Time Image-Based Rendering Framework on Graphics Hardware

Sammy Rogmans, Jiangbo Lu, Gauthier Lafruit

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Tags: Computer science, nVidia, nVidia GeForce 7900 GTX, nVidia GeForce 8800 GT, nVidia Quadro FX 1600 M, Presentation, Rendering

June 20, 2011 by hgpu

Reconfigurable Control Variate Monte-Carlo Designs for Pricing Exotic Options

Anson H.T. Tse, David B. Thomas, K.H. Tsoi, Wayne Luk

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Tags: CUDA, Finance, FPGA, Monte Carlo simulation, nVidia, Tesla C1060

June 20, 2011 by hgpu

Lattice-based flow field modeling

Xiaoming Wei, Ye Zhao, Zhe Fan, Wei Li, Feng Qiu, Suzanne Yoakum-Stover, Arie E. Kaufman

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Tags: Fluid dynamics, Fluid simulation, Lattice Boltzmann model, nVidia, nVidia GeForce FX 5900 Ultra, OpenGL

June 20, 2011 by hgpu

Implementing Sparse Matrix-Vector multiplication using CUDA based on a hybrid sparse matrix format

Wei Cao, Lu Yao, Zongzhe Li, Yongxian Wang, Zhenghua Wang

Tags: Algorithms, Computer science, CUDA, Linear Algebra, nVidia, Sparse matrix

June 20, 2011 by hgpu

Second Order Pre-Integrated Volume Rendering

Jean-Francois El Hajjar, Stephane Marchesin, Jean-Michel Dischler, Catherine Mongenet

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Tags: 3D Graphics and Realism, Algorithms, Computer science, Image generation, nVidia, nVidia GeForce 7800 GTX, OpenGL, Rendering

June 20, 2011 by hgpu

GPUs for fast triggering and pattern matching at the CERN experiment NA62

Gianluca Lamanna, Gianmaria Collazuol, Marco Sozzi

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Tags: CUDA, Data acquisition, High Energy Physics - Experiment, Nuclear Experiment, nVidia, Pattern recognition, Physics, Tesla C1060

June 20, 2011 by hgpu

Efficient Surface Reconstruction From Noisy Data Using Regularized Membrane Potentials

A.C. Jalba, J.B.T.M. Roerdink

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Tags: Computer science, Image reconstruction, Mass-spring systems, nVidia, nVidia GeForce FX 5900 Ultra

June 20, 2011 by hgpu

Solving 2D Nonlinear Unsteady Convection-Diffusion Equations on Heterogenous Platforms with Multiple GPUs

Canqun Yang, Zhen Ge, Juan Chen, Feng Wang, Yunfei Du

Tags: Diffusion equation, Heterogeneous systems, nVidia, Physics, Tesla S1070

June 20, 2011 by hgpu

Accelerating batched 1D-FFT with a CUDA-capable computer

R. de Beer, D. van Ormondt, F. Di Cesare, D. Graveron-Demilly, D.A. Karras, Z. Starcuk

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Tags: CUDA, FFT, Image processing, nVidia, nVidia GeForce 9600 GT, Signal processing

June 20, 2011 by hgpu

A Parallel Streaming Motion Estimation for Real-Time HD H.264 Encoding on Programmable Processors

Ju Ren, Mei Wen, Chunyuan Zhang, Huayou Su, Yi He, Nan Wu

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Tags: Computer science, H.264/AVC, nVidia, nVidia GeForce 8800 GT, Video decoding

June 20, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

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high performance computing on graphics processing units: hgpu.org

Protein alignment algorithms with an efficient backtracking routine on multiple GPUs

Fast, parallel, GPU-based construction of space filling curves and octrees

A Scalable End-to-End Optimized Real-Time Image-Based Rendering Framework on Graphics Hardware

Reconfigurable Control Variate Monte-Carlo Designs for Pricing Exotic Options

Lattice-based flow field modeling

Implementing Sparse Matrix-Vector multiplication using CUDA based on a hybrid sparse matrix format

Second Order Pre-Integrated Volume Rendering

GPUs for fast triggering and pattern matching at the CERN experiment NA62

Efficient Surface Reconstruction From Noisy Data Using Regularized Membrane Potentials

Solving 2D Nonlinear Unsteady Convection-Diffusion Equations on Heterogenous Platforms with Multiple GPUs

Accelerating batched 1D-FFT with a CUDA-capable computer

A Parallel Streaming Motion Estimation for Real-Time HD H.264 Encoding on Programmable Processors

Recent source codes

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

Gaia AVU-GSR

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LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

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