high performance computing on graphics processing units: hgpu.org

Nicholas P. Bailey, Trond S. Ingebrigtsen, Jesper Schmidt Hansen, Arno A. Veldhorst, Lasse Bohling, Claire A. Lemarchand, Andreas E. Olsen, Andreas K. Bacher, Heine Larsen, Jeppe C. Dyre, Thomas B. Schroder

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Tags: Computational Physics, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 780 Ti, Package, Physics, Python

June 17, 2015 by hgpu

Poisson-Boltzmann model for protein-surface electrostatic interactions and grid-convergence study using the PyGBe code

Christopher D. Cooper, Lorena A. Barba

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Tags: Biomolecules, Boltzmann equation, Computational Physics, CUDA, Electrostatics, nVidia, Package, Physics, Poisson Boltzmann, Python, Tesla C2075

June 14, 2015 by hgpu

Accelerated Nodal Discontinuous Galerkin Simulations for Reverse Time Migration with Large Clusters

Axel Modave, Amik St-Cyr, Wim A. Mulder, Tim Warburton

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Tags: ATI, ATI Radeon HD 7970, Computational Physics, CUDA, Geophysics, MPI, nVidia, nVidia GeForce GTX 980, OpenCL, Physics, Tesla K20, Tesla K40

June 5, 2015 by hgpu

Particle-in-Cell Laser-Plasma Simulation on Xeon Phi Coprocessors

I.A. Surmin, S.I. Bastrakov, E.S. Efimenko, A.A. Gonoskov, A.V. Korzhimanov, I.B. Meyerov

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Tags: Benchmarking, Computational Physics, Intel Xeon Phi, Particle-in-cell methods, Physics, Plasma physics

May 28, 2015 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

A GPU-based Large-scale Monte Carlo Simulation Method for Systems with Long-range Interactions

On the Way to Future’s High Energy Particle Physics Transport Code

Adaptive algebraic multigrid on SIMD architectures

The Dynamical Kernel Scheduler – Part 1

Fast GPU-based calculations in few-body quantum scattering

Adaptive Multi-GPU Exchange Monte Carlo for the 3D Random Field Ising Model

Best bang for your buck: GPU nodes for GROMACS biomolecular simulations

Spectral Ewald Acceleration of Stokesian Dynamics for polydisperse suspensions

RUMD: A general purpose molecular dynamics package optimized to utilize GPU hardware down to a few thousand particles

Poisson-Boltzmann model for protein-surface electrostatic interactions and grid-convergence study using the PyGBe code

Accelerated Nodal Discontinuous Galerkin Simulations for Reverse Time Migration with Large Clusters

Particle-in-Cell Laser-Plasma Simulation on Xeon Phi Coprocessors

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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