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An efficient implementation of Smith Waterman algorithm on GPU using CUDA, for massively parallel scanning of sequence databases

Lukasz Ligowski, Witold Rudnicki

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Tags: Bioinformatics, Biology, Computational biology, Computer science, CUDA, nVidia, nVidia GeForce 9800 GX2, Sequence alignment, Smith-Waterman algorithm

October 28, 2010 by hgpu

Acceleration technique for volume rendering using 2D texture based ray plane casting on GPU

Kyung-Seok Oh, Chang-Sung Jeong

Tags: Computer science, Raytracing, Rendering, Visualization

October 28, 2010 by hgpu

An efficient, model-based CPU-GPU heterogeneous FFT library

Y. Ogata, T. Endo, N. Maruyama, S. Matsuoka

Tags: Computer science, FFT

October 28, 2010 by hgpu

Visualization and GPU-accelerated simulation of medical ultrasound from CT images

Oliver Kutter, Ramtin Shams, Nassir Navab

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Tags: ATI, ATI Radeon 1950 PRO, Computer science, GLSL, Medicine, nVidia, nVidia Quadro FX 3600 M, nVidia Quadro FX 5600, OpenGL, Ultrasound, Visualization

October 28, 2010 by hgpu

GPU Ray Marching for Real-Time Rendering of Participating Media

Jeonghun Han, Hyunwoo Ki, Kyoungsu Oh

Tags: Computer science, Computer vision, Raytracing, Rendering, Visualization

October 28, 2010 by hgpu

Jump flooding in GPU with applications to Voronoi diagram and distance transform

Guodong Rong, Tiow S. Tan

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Tags: Computer science, Digital geometry, Interactive application, nVidia, nVidia GeForce 6800 GT, OpenGL, Visualization, Voronoi diagram

October 28, 2010 by hgpu

String Matching on a Multicore GPU Using CUDA

Charalampos S. Kouzinopoulos, Konstantinos G. Margaritis

Tags: Algorithms, Computer science, CUDA, nVidia, String matching

October 28, 2010 by hgpu

Compute Pairwise Manhattan Distance and Pearson Correlation Coefficient of Data Points with GPU

Dar J. Chang, Ahmed H. Desoky, Ming Ouyang, Eric C. Rouchka

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Tags: Computer science, CUDA, Hierarchical clustering, nVidia, Similarity and dissimilarity metrics, Tesla C870

October 28, 2010 by hgpu

Motion Compensation and Reconstruction of H.264/AVC Video Bitstreams using the GPU

Bart Pieters, Dieter Van Rijsselbergen, Wesley De Neve, Rik Van de Walle

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Tags: Computer science, CUDA, H.264/AVC, Motion compensation, nVidia, nVidia GeForce 6800 GT, nVidia GeForce 7800 GTX

October 28, 2010 by hgpu

GPU-based object-order ray-casting for large datasets

Wei Hong, Feng Qiu, A. Kaufman

Tags: Computer science, Raytracing, Rendering

October 28, 2010 by hgpu

Analyzing CUDA workloads using a detailed GPU simulator

Ali Bakhoda, George L. Yuan, Wilson W. L. Fung, Henry Wong, Tor M. Aamodt

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Tags: Computer science, CUDA, nVidia, nVidia GeForce 8600 GTS, PTX

October 28, 2010 by hgpu

CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment

Svetlin Manavski, Giorgio Valle

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Tags: Bioinformatics, Biology, Computational biology, Computer science, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Smith-Waterman algorithm

October 28, 2010 by hgpu

CLUEstering: a high-performance density-based clustering library for scientific computing

PyOMP: OpenMP for Python in Numba

PyOMP: Parallel programming for CPUs and GPUs with OpenMP and Python

GPPerf: Energy-Aware GPU Performance Prediction and Optimization Framework

Understanding GEMM Performance and Energy on NVIDIA Ada Lovelace: A Machine Learning-Based Analytical Approach

HiRep

Scaling SU(2) to 1000 GPUs using HiRep

Gaia AVU-GSR

Performance portability via C++ PSTL, SYCL, OpenMP, and HIP: the Gaia AVU-GSR case study

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

gpuPairHMM: High-speed Pair-HMM Forward Algorithm for DNA Variant Calling on GPUs

See all packages

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high performance computing on graphics processing units: hgpu.org

An efficient implementation of Smith Waterman algorithm on GPU using CUDA, for massively parallel scanning of sequence databases

Acceleration technique for volume rendering using 2D texture based ray plane casting on GPU

An efficient, model-based CPU-GPU heterogeneous FFT library

Visualization and GPU-accelerated simulation of medical ultrasound from CT images

GPU Ray Marching for Real-Time Rendering of Participating Media

Jump flooding in GPU with applications to Voronoi diagram and distance transform

String Matching on a Multicore GPU Using CUDA

Compute Pairwise Manhattan Distance and Pearson Correlation Coefficient of Data Points with GPU

Motion Compensation and Reconstruction of H.264/AVC Video Bitstreams using the GPU

GPU-based object-order ray-casting for large datasets

Analyzing CUDA workloads using a detailed GPU simulator

CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment

Recent source codes

tdg-benchs: benchmarks used to test the performance of taskgraph

SW#SYCL

LLOR: Automatic Repair of OpenMP Programs

Solomon: Simple Off-LOading Macros Orchestrating multiple Notations

CLUEstering: a high-performance density-based clustering library for scientific computing

PyOMP: OpenMP for Python in Numba

GPPerf: Energy-Aware GPU Performance Prediction and Optimization Framework

HiRep

Gaia AVU-GSR

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

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