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Molecular Dynamics on a Grand Scale

Matthew James Mawson Breeze

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Tags: ATI, ATI Radeon X1600, Chemistry, GLSL, Molecular dynamics, nVidia, nVidia GeForce 6200, nVidia GeForce 8800 GTS, OpenGL, Thesis

December 17, 2010 by hgpu

Accelerating Monte Carlo simulations with an NVIDIA graphics processor

Paul Martinsen, Johannes Blaschke, Rainer Kunnemeyer and Robert Jordan

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Tags: CUDA, Monte Carlo simulation, nVidia, nVidia GeForce 8800 GT, Physics

December 16, 2010 by hgpu

Real-time optical micro-manipulation using optimized holograms generated on the GPU

S. Bianchi, R. Di Leonardo

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Tags: Computer holography, CUDA, nVidia, nVidia GeForce GTX 260, Optics, Physics

December 16, 2010 by hgpu

Fast and Accurate Finite-Element Multigrid Solvers for PDE Simulations on GPU Clusters

Dominik Goddeke

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Tags: CUDA, Finite element method, Fluid dynamics, GPU cluster, Navier-Stokes equations, NSEs, nVidia, nVidia GeForce 6800, nVidia GeForce 7600 GT, nVidia GeForce 7900 GT, nVidia GeForce 8600 GT, nVidia GeForce 8800 GTX, nVidia GeForce 9600 GT, nVidia GeForce GTX 280, OpenGL, Review, Thesis

December 16, 2010 by hgpu

GPU Acceleration of an Unmodified Parallel Finite Element Navier-Stokes Solver

Dominik Goddeke, Sven H.M. Buijssen, Hilmar Wobker and Stefan Turek

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Tags: CUDA, Finite element method, Fluid dynamics, GPU cluster, Navier-Stokes equations, NSEs, nVidia, nVidia GeForce 8800 GTX

December 16, 2010 by hgpu

Exploring weak scalability for FEM calculations on a GPU-enhanced cluster

Dominik Goddeke, Robert Strzodka, Jamaludin Mohd-Yusof, Patrick McCormick, Sven H.M. Buijssen, Matthias Grajewski and Stefan Turek

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Tags: Computer science, Finite element method, GPU cluster, MPI, nVidia, nVidia Quadro FX 5600

December 16, 2010 by hgpu

High-throughput Bayesian network learning using heterogeneous multicore computers

Michael D. Linderman, Robert Bruggner, Vivek Athalye, Teresa H. Meng, Narges B. Asadi, Garry P. Nolan

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Tags: Algorithms, CUDA, GPU cluster, Mathematics, nVidia, nVidia GeForce GTX 285, Statistics, Tesla C1060, Tesla S1070

December 15, 2010 by hgpu

Integrative multicellular biological modeling: a case study of 3D epidermal development using GPU algorithms

Scott Christley, Briana Lee, Xing Dai, Qing Nie

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Tags: Biology, CUDA, nVidia, nVidia GeForce GTX 285

December 15, 2010 by hgpu

Visual simulation of thermal fluid dynamics in a pressurized water reactor

Zhe Fan, Yu-Chuan Kuo, Ye Zhao, Feng Qiu, Arie Kaufman, William Arcieri

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Tags: Cg, Fluid dynamics, GPU cluster, Lattice Boltzmann model, nVidia, nVidia Quadro FX 4500, OpenGL, Visualization

December 15, 2010 by hgpu

Scalable and Interactive Segmentation and Visualization of Neural Processes in EM Datasets

Won-ki Jeong, Johanna Beyer, Student Member, Markus Hadwiger, Amelio Vazquez, Student Member, Hanspeter Pfister, Senior Member, Ross T. Whitaker

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Tags: Biology, Electron microscopy, Neuroscience, nVidia, nVidia Quadro FX 5800, Rendering, Tesla C1060

December 15, 2010 by hgpu

Haptic guided 3-D deformable image registration

Petter Risholm, Eigil Samset

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Tags: Image processing, Image registration, Medicine, nVidia, nVidia GeForce 7800 GTX, OpenGL

December 15, 2010 by hgpu

Hybrid of genetic algorithm and local search to solve MAX-SAT problem using nVidia CUDA framework

Asim Munawar, Mohamed Wahib, Masaharu Munetomo, Kiyoshi Akama

Tags: Algorithms, Computer science, CUDA, nVidia, Search, Tesla C1060

December 15, 2010 by hgpu

Allo: Accelerator Design Language

Dato: A Task-Based Programming Model for Dataflow Accelerators

Towards Robust Agentic CUDA Kernel Benchmarking, Verification, and Optimization

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Accelerating a Linear Programming Algorithm on AMD GPUs

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

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high performance computing on graphics processing units: hgpu.org

Molecular Dynamics on a Grand Scale

Accelerating Monte Carlo simulations with an NVIDIA graphics processor

Real-time optical micro-manipulation using optimized holograms generated on the GPU

Fast and Accurate Finite-Element Multigrid Solvers for PDE Simulations on GPU Clusters

GPU Acceleration of an Unmodified Parallel Finite Element Navier-Stokes Solver

Exploring weak scalability for FEM calculations on a GPU-enhanced cluster

High-throughput Bayesian network learning using heterogeneous multicore computers

Integrative multicellular biological modeling: a case study of 3D epidermal development using GPU algorithms

Visual simulation of thermal fluid dynamics in a pressurized water reactor

Scalable and Interactive Segmentation and Visualization of Neural Processes in EM Datasets

Haptic guided 3-D deformable image registration

Hybrid of genetic algorithm and local search to solve MAX-SAT problem using nVidia CUDA framework

Recent source codes

Allo: Accelerator Design Language

Towards Robust Agentic CUDA Kernel Benchmarking, Verification, and Optimization

HPC Benchmark Survey

HDM: Home made Diffusion Models

General Matrix Multiplication (GEMM)

CrossTL: Universal Programming Language & Translator

TBD-GPU

DG-SWEM - The Discontinuous Galerkin Shallow Water Equation Model

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

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