high performance computing on graphics processing units: hgpu.org

For the last two years, we have been experimenting with applying compressed sensing parallel imaging for body imaging of pediatric patients. It is a joint-effort by teams from UC Berkeley, Stanford University and GE Healthcare. This paper aims to summarize our experience so far. We describe our acquisition approach: 3D spoiled-gradient-echo with poisson-disc random undersampling […]

In this paper, we present a GPU-based algorithm which accelerates the MoM impedance matrix computation. Based on an efficient quasi-one-dimensional approximation of the reaction integrals, the MPIE formulation for the analysis of microstrip circuits is considered. We use NVIDIA CUDA as GPU development tool and choose an edge-connected line-fed patch antenna as reference problem. In […]

Compton reconstruction requires the computationally intensive, yet highly parallelizable, task of Cone of Response (CoR) back-projection. The acceleration of CoR back-projection is of significant importance as a faster algorithm allows the user to increase either the size or resolution of the imaging volume. Such acceleration also lends itself to the realization of real-time reconstruction. The […]

The programmability of recent graphic processing unit (GPU) architectures has been the main factor driving the dramatic increase in interest for this class of architectures as low-cost accelerators for a wide range of high-performance applications. Current GPU programming models, such as OpenCL and CUDA, still expose too many architectural features, such as the memory hierarchy, […]

Clinical diagnosis and quantification of liver disease have been improved through the development of techniques using contrast-enhanced liver MRI sequences. To qualitatively or quantitatively analyze such image sequences, one first needs to correct for rigid and non-rigid motion of the liver. For motion correction of the liver, we have employed bi-directional local correlation coefficient Demons, […]

Stochastic methods based on Maximum Likelihood Estimation (MLE) provide accurate tomographic reconstruction for emission imaging. Moreover methods based on MLE allow to include an accurate physical model of the imaging setup in the reconstruction process, thus enabling quantitative reconstruction of radio-tracer activity distribution. It has been shown that inclusion of a spatially dependent PSF that […]

We present results of an evaluation of a multi-device OpenCL FDTD solver. Portability between hardware manufactured by different vendors and also between highly specialized and parallel computing architectures available on the market, i.e. GPUs, multi-core CPUs and devices integrating both technologies in a single-die IC, is the main advantage of this solver. For code execution […]

Stencil computation is one of the important kernels in scientific computations, however, the sustained performance is limited by memory bandwidth especially on multi-core microprocessors and GPGPUs due to its small operationalintensity. In this paper, we propose a scalable streaming-array (SSA) of simple soft-processors for high-performance stencil computation on multiple FPGAs. The SSA architecture allows a […]

BACKGROUND: Pairwise sequence alignment methods are widely used in biological research. The increasing number of sequences is perceived as one of the upcoming challenges for sequence alignment methods in the nearest future. To overcome this challenge several GPU (Graphics Processing Unit) computing approaches have been proposed lately. These solutions show a great potential of a […]

Space Filling Curves (SFC) are particularly useful in linearization of data living in two and three dimensional spaces and have been used in a number of applications in scientific computing, and visualization. Interestingly, octrees, another versatile data structure in computer graphics, can be viewed as multiple SFCs at varying resolutions, albeit with parent-child relationship. In […]

The hydration reaction of Portland cement paste has an important impact on the formation of microstructure and development of strength. However, simulating the evolution of hydration reaction is very difficult because there are multi-phased, multi-sized and interrelated complex chemical and physical reactions during cement hydration. In this paper, a feedforward neural network model is built […]

This paper presents the system-level overview of a real-time image- based rendering framework performing multiple intermediate view synthesis, completely on the Graphics Processing Unit (GPU). The software design achieves high-performance, yet maintains flexibility and ease of development through a hierarchical layered architecture. The framework implements the intermediate view synthesis by a chain of consecutive processing […]