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GPU acceleration of cutoff pair potentials for molecular modeling applications

Christopher I. Rodrigues, David J. Hardy, John E. Stone, Klaus Schulten, Wen Mei

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Tags: Algorithms, Biology, Chemistry, CUDA, Medicine, Molecular dynamics, nVidia, Tesla C870

October 28, 2010 by hgpu

AUTO-GC: Automatic translation of data mining applications to GPU clusters

Wenjing Ma, Gagan Agrawal

Tags: Code generation, Computer science, CUDA, GPU cluster, nVidia

October 28, 2010 by hgpu

GPU-based streaming architectures for fast cone-beam CT image reconstruction and demons deformable registration

G. C. Sharp, N. Kandasamy, H. Singh, M. Folkert

Tags: Brook, Computed radiography, Computer science, Image processing, Medicine, nVidia, nVidia GeForce 8800 GTX

October 28, 2010 by hgpu

CUDA cuts: Fast graph cuts on the GPU

Vibhav Vineet, P. J. Narayanan

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Tags: Computer science, CUDA, Image processing, nVidia, nVidia GeForce 8800 GTX

October 28, 2010 by hgpu

GPU packet classification using OpenCL: a consideration of viable classification methods

Alastair Nottingham, Barry Irwin

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Tags: Algorithms, Computer science, nVidia, OpenCL

October 28, 2010 by hgpu

An adaptive performance modeling tool for GPU architectures

Sara S. Baghsorkhi, Matthieu Delahaye, Sanjay J. Patel, William D. Gropp, Wen mei

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Tags: Analytical model, Computer science, CUDA, nVidia, nVidia GeForce 8800 GTX, Performance

October 28, 2010 by hgpu

An efficient implementation of Smith Waterman algorithm on GPU using CUDA, for massively parallel scanning of sequence databases

Lukasz Ligowski, Witold Rudnicki

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Tags: Bioinformatics, Biology, Computational biology, Computer science, CUDA, nVidia, nVidia GeForce 9800 GX2, Sequence alignment, Smith-Waterman algorithm

October 28, 2010 by hgpu

Visualization and GPU-accelerated simulation of medical ultrasound from CT images

Oliver Kutter, Ramtin Shams, Nassir Navab

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Tags: ATI, ATI Radeon 1950 PRO, Computer science, GLSL, Medicine, nVidia, nVidia Quadro FX 3600 M, nVidia Quadro FX 5600, OpenGL, Ultrasound, Visualization

October 28, 2010 by hgpu

Jump flooding in GPU with applications to Voronoi diagram and distance transform

Guodong Rong, Tiow S. Tan

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Tags: Computer science, Digital geometry, Interactive application, nVidia, nVidia GeForce 6800 GT, OpenGL, Visualization, Voronoi diagram

October 28, 2010 by hgpu

String Matching on a Multicore GPU Using CUDA

Charalampos S. Kouzinopoulos, Konstantinos G. Margaritis

Tags: Algorithms, Computer science, CUDA, nVidia, String matching

October 28, 2010 by hgpu

Compute Pairwise Manhattan Distance and Pearson Correlation Coefficient of Data Points with GPU

Dar J. Chang, Ahmed H. Desoky, Ming Ouyang, Eric C. Rouchka

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Tags: Computer science, CUDA, Hierarchical clustering, nVidia, Similarity and dissimilarity metrics, Tesla C870

October 28, 2010 by hgpu

Motion Compensation and Reconstruction of H.264/AVC Video Bitstreams using the GPU

Bart Pieters, Dieter Van Rijsselbergen, Wesley De Neve, Rik Van de Walle

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Tags: Computer science, CUDA, H.264/AVC, Motion compensation, nVidia, nVidia GeForce 6800 GT, nVidia GeForce 7800 GTX

October 28, 2010 by hgpu

AutoPass: Evidence-Guided LLM Agents for Compiler Performance Tuning

KernelBenchX: A Comprehensive Benchmark for Evaluating LLM-Generated GPU Kernels

CUDA Kernel Fusion Benchmarks

Analyzing the Impact of Kernel Fusion on GPU Tensor Operation Performance: A Systematic Performance Study

IntelliKit: Agent-first tooling for AMD hardware

Kerncap: Automated Kernel Extraction and Isolation for AMD GPUs

DITRON: Distributed Compiler based on Triton for Parallel Systems

DITRON: Distributed Multi-level Tiling Compiler for Parallel Tensor Programs

CuTile Benchmark Suite: Performance and Productivity Tradeoffs for GPU Kernel Programming on Blackwell Architecture

Evaluating CUDA Tile for AI Workloads on Hopper and Blackwell GPUs

Agentic Code Optimization via Compiler-LLM Cooperation

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high performance computing on graphics processing units: hgpu.org

GPU acceleration of cutoff pair potentials for molecular modeling applications

AUTO-GC: Automatic translation of data mining applications to GPU clusters

GPU-based streaming architectures for fast cone-beam CT image reconstruction and demons deformable registration

CUDA cuts: Fast graph cuts on the GPU

GPU packet classification using OpenCL: a consideration of viable classification methods

An adaptive performance modeling tool for GPU architectures

An efficient implementation of Smith Waterman algorithm on GPU using CUDA, for massively parallel scanning of sequence databases

Visualization and GPU-accelerated simulation of medical ultrasound from CT images

Jump flooding in GPU with applications to Voronoi diagram and distance transform

String Matching on a Multicore GPU Using CUDA

Compute Pairwise Manhattan Distance and Pearson Correlation Coefficient of Data Points with GPU

Motion Compensation and Reconstruction of H.264/AVC Video Bitstreams using the GPU

Recent source codes

AutoPass: Evidence-Guided LLM Agents for Compiler Performance Tuning

Probe-and-Refine Tuning of Repository Guidance for AI Coding Agents

CUDAnalyst (CUDA + Analyst)

CodegenBench

KernelBenchX: A Comprehensive Benchmark for Evaluating LLM-Generated GPU Kernels

CUDA Kernel Fusion Benchmarks

IntelliKit: Agent-first tooling for AMD hardware

DITRON: Distributed Compiler based on Triton for Parallel Systems

CuTile Benchmark Suite: Performance and Productivity Tradeoffs for GPU Kernel Programming on Blackwell Architecture

Agentic Code Optimization via Compiler-LLM Cooperation

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