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Accelerating the scoring module of mass spectrometry-based peptide identification using GPUs

You Li, Hao Chi, Leihao Xia, Xiaowen Chu

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Tags: Bioinformatics, Biology, CUDA, GPU cluster, nVidia, nVidia GeForce GTX 580, Spectrometry

May 12, 2014 by hgpu

Managing the Topology of Heterogeneous Cluster Nodes with Hardware Locality (hwloc)

Brice Goglin

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Source codes

Tags: Computer science, CUDA, GPU cluster, Heterogeneous systems, nVidia, OpenMPI, Package, Xeon Phi

May 7, 2014 by hgpu

Multi-GPU Implementation of the Minimum Volume Simplex Analysis Algorithm for Hyperspectral Unmixing

Alexander Agathos, Jun Li, Dana Petcu, Antonio Plaza

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Tags: Algorithms, Computer science, CUDA, GPU cluster, nVidia, Sensing, Tesla M2070

April 29, 2014 by hgpu

Toward optimised skeletons for heterogeneous parallel architecture with performance cost model

Khari A. Armih

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Tags: Computer science, CUDA, GPU cluster, Heterogeneous systems, MapReduce, Matrix multiplication, nVidia, nVidia GeForce GT 520, Thesis

April 21, 2014 by hgpu

Multi-GPU cluster wave propagation and OpenGL visualization

Jacob Lundgren, Nils Olofsson

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Tags: Computer science, CUDA, Finite difference, GPU cluster, nVidia, nVidia GeForce GTX 580, nVidia GeForce GTX 670, OpenGL, Visualization

March 15, 2014 by hgpu

Two-fluid compressible simulations on GPU cluster

Philippe Helluy, Jonathan Jung

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Tags: ATI, ATI Radeon HD 5850, ATI Radeon HD 7970, Fluid dynamics, GPU cluster, nVidia, nVidia GeForce GTX 320 M, OpenCL

March 15, 2014 by hgpu

Fast Feature Selection in a GPU Cluster Using the Delta Test

Alberto Guillen, M. Isabel Garcia Arenas, Mark van Heeswijk, Dusan Sovilj, Amaury Lendasse, Luis Javier Herrera, Hector Pomares, Ignacio Rojas

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Tags: Algorithms, Computer science, CUDA, GPU cluster, Nearest neighbour, nVidia, nVidia GeForce 8400 GS, nVidia GeForce 9800 GTX, nVidia GeForce GTS 450

February 25, 2014 by hgpu

WPA/WPA2 Password Security Testing using Graphics Processing Units

Sorin Andrei Visan

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Tags: Computer science, CUDA, GPU cluster, nVidia, nVidia GeForce GT 610 M, Security

February 23, 2014 by hgpu

Petascale elliptic solvers for anisotropic PDEs on GPU clusters

Eike Hermann Muller, Robert Scheichl, Benson Muite, Eero Vainikko

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Tags: Algorithms, Computer science, CUDA, GPU cluster, Numerical Analysis, nVidia, Partial differential equations, PDEs, Tesla K20, Tesla M2090

February 17, 2014 by hgpu

Fast American Basket Option Pricing on a multi-GPU Cluster

Michael Benguigui, Francoise Baude

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Tags: Finance, GPU cluster, Machine learning, nVidia, OpenCL, Option pricing, Tesla M2050, Tesla M2075, Tesla S1070

February 17, 2014 by hgpu

GROMACS on Hybrid CPU-GPU and CPU-MIC Clusters: Preliminary Porting Experiences, Results and Next Steps

Sadaf Alam, Ugo Varetto

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Tags: Computer science, CUDA, GPU cluster, Hybrid computing, Intel Xeon Phi, MPI, nVidia, OpenCL, Tesla K20

February 12, 2014 by hgpu

A scheduling and runtime framework for a cluster of heterogeneous machines with multiple accelerators

Tarun Beri, Sorav Bansal, Subodh Kumar

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Tags: Computer science, CUDA, FFT, GPU cluster, Heterogeneous systems, Matrix multiplication, Memory model, nVidia, Prefetch, Task scheduling, Tesla M2070

February 11, 2014 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Accelerating the scoring module of mass spectrometry-based peptide identification using GPUs

Managing the Topology of Heterogeneous Cluster Nodes with Hardware Locality (hwloc)

Multi-GPU Implementation of the Minimum Volume Simplex Analysis Algorithm for Hyperspectral Unmixing

Toward optimised skeletons for heterogeneous parallel architecture with performance cost model

Multi-GPU cluster wave propagation and OpenGL visualization

Two-fluid compressible simulations on GPU cluster

Fast Feature Selection in a GPU Cluster Using the Delta Test

WPA/WPA2 Password Security Testing using Graphics Processing Units

Petascale elliptic solvers for anisotropic PDEs on GPU clusters

Fast American Basket Option Pricing on a multi-GPU Cluster

GROMACS on Hybrid CPU-GPU and CPU-MIC Clusters: Preliminary Porting Experiences, Results and Next Steps

A scheduling and runtime framework for a cluster of heterogeneous machines with multiple accelerators

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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