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GPU Accelerated Pattern Matching Algorithm for DNA Sequences to Detect Cancer using CUDA

Snehal P. Adey

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Tags: Bioinformatics, Biology, CUDA, Medicine, nVidia, Tesla C2070, Thesis

August 7, 2013 by hgpu

Systematic Performance Optimization of Cone-Beam Back-Projection on the Kepler Architecture

Timo Zinsser, Benjamin Keck

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Tags: Computed tomography, CT, CUDA, Medicine, nVidia, nVidia GeForce GTX 680, Tesla C2070, Tomography

July 27, 2013 by hgpu

Parallel birth and death process for cell nuclei extraction in histopathology images

Christophe Avenel, Pierre Fortin, Dominique Bereziat

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Tags: Biology, CUDA, Medicine, nVidia, Tesla C2070

July 25, 2013 by hgpu

Characterization of Lossy SIW Resonators Based on Multilayer Perceptron Neural Networks on Graphics Processing Unit

Giandomenico Amendola, Giovanni Angiulli, Emilio Arnieri, Luigi Boccia, Domenico De Carlo

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Tags: CUDA, Electrodynamics, Neural networks, nVidia, Tesla C2070

July 25, 2013 by hgpu

Starchart: Hardware and Software Optimization Using Recursive Partitioning Regression Trees

Wenhao Jia, Kelly A. Shaw, Margaret Martonosi

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Tags: Algorithms, ATI, ATI Radeon HD 7970, Computer science, Design space exploration, nVidia, OpenCL, Tesla C2070

July 17, 2013 by hgpu

Data Structures and Algorithms for Counting Problems on Graphs using GPU

Amlan Chatterjee, Sridhar Radhakrishnan, John K. Antonio

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Tags: Algorithms, Computer science, CUDA, Data Structures and Algorithms, nVidia, Tesla C1060, Tesla C2050, Tesla C2070

July 16, 2013 by hgpu

CUDA-C implementation of the ADER-DG method for linear hyperbolic PDEs

C. E. Castro, J. Behrens, C. Pelties

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Tags: CUDA, Differential equations, Earth and Space Sciences, Geoscience, Hyperbolic PDEs, Matrix multiplication, nVidia, Partial differential equations, PDEs, Tesla C2070

July 15, 2013 by hgpu

Solving 3D Anisotropic Elastic Wave Equations on Parallel GPU Devices

Robin M. Weiss, Jeffrey Shragge

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Tags: CUDA, FDTD, Finite-difference time-domain, MPI, nVidia, nVidia GeForce GTX 480, Physics, Tesla C2070, Wave equation

July 7, 2013 by hgpu

GPU-enabled Efficient Executions of Radiation Calculations in Climate Modelling

Sai Kiran Korwar

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Tags: CUDA, Earth and Space Sciences, nVidia, OpenACC, Tesla C2070, Tesla K20, Tesla M2090, Tesla S2050, Thesis, Weather prediction

July 5, 2013 by hgpu

Efficient computation of constrained parameterizations on parallel platforms

Theodoros Athanasiadis, Georgios Zioupos, Ioannis Fudos

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Source codes

Tags: 3D Graphics and Realism, Computer science, nVidia, OpenCL, Package, Tesla C2070

June 29, 2013 by hgpu

Beam Dynamics Simulations with a GPU-accelerated Version of ELEGANT

K. Amyx, J. Balasalle, J. King, I.V. Pogorelov, M. Borland, R. Soliday

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Tags: CUDA, High Energy Physics - Experiment, nVidia, Physics, Tesla C2070

June 21, 2013 by hgpu

Accelerating GPU Programs by Reducing Irregular Control Flow and Memory Access

Tomohiro Okuyama

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Tags: Algorithms, Biophysics, CUDA, Differential equations, Heterogeneous systems, nVidia, ODEs, Ordinary differential equations, Physics, Tesla C2070, Thesis

June 18, 2013 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

See all packages

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high performance computing on graphics processing units: hgpu.org

GPU Accelerated Pattern Matching Algorithm for DNA Sequences to Detect Cancer using CUDA

Systematic Performance Optimization of Cone-Beam Back-Projection on the Kepler Architecture

Parallel birth and death process for cell nuclei extraction in histopathology images

Characterization of Lossy SIW Resonators Based on Multilayer Perceptron Neural Networks on Graphics Processing Unit

Starchart: Hardware and Software Optimization Using Recursive Partitioning Regression Trees

Data Structures and Algorithms for Counting Problems on Graphs using GPU

CUDA-C implementation of the ADER-DG method for linear hyperbolic PDEs

Solving 3D Anisotropic Elastic Wave Equations on Parallel GPU Devices

GPU-enabled Efficient Executions of Radiation Calculations in Climate Modelling

Efficient computation of constrained parameterizations on parallel platforms

Beam Dynamics Simulations with a GPU-accelerated Version of ELEGANT

Accelerating GPU Programs by Reducing Irregular Control Flow and Memory Access

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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