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Comparison of HPC Architectures for Computing All-Pairs Shortest Paths. Intel Xeon Phi KNL vs NVIDIA Pascal

Manuel Costanzo, Enzo Rucci, Ulises Costi, Franco Chichizola, Marcelo Naiouf

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Tags: Algorithms, All-Pairs Distance, Computer science, CUDA, HPC, Intel, Intel Xeon Phi, nVidia, nVidia GeForce GTX Titan X, Package

May 23, 2021 by hgpu

Blocked All-Pairs Shortest Paths Algorithm on Intel Xeon Phi KNL Processor: A Case Study

Enzo Rucci, Armando De Giusti, Marcelo Naiouf

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Tags: All-Pairs Distance, Computer science, Intel Xeon Phi, OpenMP

December 3, 2017 by hgpu

Fast network centrality analysis using GPUs

Zhiao Shi, Bing Zhang

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Tags: All-Pairs Distance, Bioinformatics, Biology, CUDA, nVidia, Package, Tesla C2050

May 13, 2011 by hgpu

A Task Parallel Algorithm for Computing the Costs of All-Pairs Shortest Paths on the CUDA-Compatible GPU

Tomohiro Okuyama, Fumihiko Ino, Kenichi Hagihara

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Tags: Algorithms, All-Pairs Distance, Computer science, CUDA, nVidia, nVidia GeForce 8800 GTS, Path problems

November 5, 2010 by hgpu

Exploiting graphics processing units for computational biology and bioinformatics

Joshua L. Payne, Nicholas A. Sinnott-Armstrong, Jason H. Moore

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Tags: All-Pairs Distance, Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 9600 M, Package

October 30, 2010 by hgpu

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

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high performance computing on graphics processing units: hgpu.org

Comparison of HPC Architectures for Computing All-Pairs Shortest Paths. Intel Xeon Phi KNL vs NVIDIA Pascal

Blocked All-Pairs Shortest Paths Algorithm on Intel Xeon Phi KNL Processor: A Case Study

Fast network centrality analysis using GPUs

A Task Parallel Algorithm for Computing the Costs of All-Pairs Shortest Paths on the CUDA-Compatible GPU

Exploiting graphics processing units for computational biology and bioinformatics

Recent source codes

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

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