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Relativistic Hydrodynamics on Graphic Cards

Jochen Gerhard, Volker Lindenstruth, Marcus Bleicher

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Tags: Algorithms, ATI, ATI Radeon HD 5870, Cluster computing, High Energy Physics - Phenomenology, High Energy Physics - Theory, Molecular dynamics, OpenCL, Performance, Physics, QCD

June 6, 2012 by hgpu

GPU-accelerated simulation of colloidal suspensions with direct hydrodynamic interactions

Michael Kopp, Felix Hofling

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Tags: Algorithms, Computational Physics, CUDA, Molecular dynamics, nVidia, Package, Physics, Tesla C2050, Tesla S1070

May 30, 2012 by hgpu

Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 1. Generalized Born

Andreas W. Gotz, Mark J. Williamson, Dong Xu, Duncan Poole, Scott Le Grand, Ross C. Walker

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Tags: Algorithms, Chemistry, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 580, Tesla C1060, Tesla C2070, Tesla M2090

May 26, 2012 by hgpu

Random number generators for massively parallel simulations on GPU

Markus Manssen, Martin Weigel, Alexander K. Hartmann

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Tags: Algorithms, Computational Physics, CUDA, High Energy Physics - Lattice, Molecular dynamics, Monte Carlo simulation, nVidia, nVidia GeForce GTX 480, Physics, Pseudo-random number generators, Review, Statistical Mechanics

May 1, 2012 by hgpu

Reuse and Refactoring of GPU Kernels to Design Complex Applications

Santonu Sarkar, Sayantan Mitra, Ashok Srinivasan

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Tags: Computer science, CUDA, FFT, Molecular dynamics, nVidia, nVidia GeForce GTX 480, Optimization, Software Engineering, Tesla S1050

February 24, 2012 by hgpu

High Performance N-Body Simulation and Visualization through CUDA Architecture

Edgar Josafat Martinez Noriega, Tetsu Narumi

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Tags: CUDA, Molecular dynamics, N-body simulation, nVidia, nVidia GeForce GTX 280, OpenGL, Physics, Rendering, Visualization

February 22, 2012 by hgpu

LAMMPScuda – a new GPU accelerated Molecular Dynamics Simulations Package and its Application to Ion-Conducting Glasses

Christian Robert Trott

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Tags: Biology, Computational Physics, CUDA, Heterogeneous systems, Molecular dynamics, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 470, Package, Physics, Polymer Systems, Tesla C1060, Thesis

February 13, 2012 by hgpu

Implementing Molecular Dynamics on Hybrid High Performance Computers – Particle-Particle Particle-Mesh

W. Michael Brown, Axel Kohlmeyer, Steven J. Plimpton, Arnold N. Tharrington

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Tags: Algorithms, Chemistry, CUDA, Electrostatics, GPU cluster, Heterogeneous systems, Molecular dynamics, nVidia, OpenCL, OpenMPI, Package, Physics, Tesla M2070

February 10, 2012 by hgpu

Parallel Contour-Buildup Algorithm for the Molecular Surface

Michael Krone, Sebastian Grottel, Thomas Ertl

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Tags: Algorithms, Chemistry, CUDA, Molecular dynamics, Molecular surface, nVidia, nVidia GeForce GTX 580, Optimization, Pharmaceuticals, Visualization

December 20, 2011 by hgpu

Data analysis and 3D evolution in High Energy Physics using graphic processor

Alexandru Jipa, Ciprian-Mihai Mitu, Mihai Niculescu, Sorin-Ion Zgura

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Tags: CUDA, Molecular dynamics, Nuclear physics, nVidia, nVidia GeForce 9600 GT, Physics, Visualization

December 11, 2011 by hgpu

Directives Based Programming of GPU Accelerated Systems

Saif Mulla

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Tags: Computer science, CUDA, Molecular dynamics, nVidia, Programming techniques, Tesla C2050, Thesis

November 29, 2011 by hgpu

Solving Dense Generalized Eigenproblems on Multi-threaded Architectures

Jose I. Aliaga, Paolo Bientinesi, Davor Davidovic, Edoardo Di Napoli, Francisco D. Igual, Enrique S. Quintana-Orti

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Tags: Computer science, CUDA, Linear Algebra, Mathematical Software, Molecular dynamics, nVidia, Performance, Tesla C2050

November 29, 2011 by hgpu

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

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high performance computing on graphics processing units: hgpu.org

Relativistic Hydrodynamics on Graphic Cards

GPU-accelerated simulation of colloidal suspensions with direct hydrodynamic interactions

Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 1. Generalized Born

Random number generators for massively parallel simulations on GPU

Reuse and Refactoring of GPU Kernels to Design Complex Applications

High Performance N-Body Simulation and Visualization through CUDA Architecture

LAMMPScuda – a new GPU accelerated Molecular Dynamics Simulations Package and its Application to Ion-Conducting Glasses

Implementing Molecular Dynamics on Hybrid High Performance Computers – Particle-Particle Particle-Mesh

Parallel Contour-Buildup Algorithm for the Molecular Surface

Data analysis and 3D evolution in High Energy Physics using graphic processor

Directives Based Programming of GPU Accelerated Systems

Solving Dense Generalized Eigenproblems on Multi-threaded Architectures

Recent source codes

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

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