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Multicore and GPU Algorithms for Nussinov RNA Folding

J. Li, S. Ranka, S. Sahni

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Tags: Biology, CUDA, nVidia, nVidia Tesla C2050, RNA

April 3, 2014 by hgpu

Pairwise Sequence Alignment for Very Long Sequences on GPUs

J. Li, S. Ranka, S. Sahni

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Tags: CUDA, Genetics, nVidia, nVidia Tesla C2050, Sequence alignment, Smith-Waterman algorithm

April 2, 2014 by hgpu

Acceleration of Diagrammatic Determinantal Quantum Monte Carlo Calculations using GPUs

M. Schmitt, I. Bethune, P. Haase, T. Pruschke

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Tags: CUDA, Monte Carlo simulation, nVidia, nVidia Tesla C2050, Physics, Quantum Physics

April 2, 2014 by hgpu

GPU-accelerated automatic identification of robust beam setups for proton and carbon-ion radiotherapy

F. Ammazzalorso, T. Bednarz, U. Jelen

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Tags: Medicine, nVidia, nVidia Tesla C2050, OpenCL, Radiotherapy

March 28, 2014 by hgpu

Coccinelle: a C code transformation engine using SmPL for matches, refactorings, and bug fixing

Advances in Semantic Patching for HPC-oriented Refactorings with Coccinelle

DuoReduce: MLIR's benchmark

Hardware-Assisted Software Testing and Debugging for Heterogeneous Computing

Shamrock: Multi-GPU hydrodynamics for astrophysics

The Shamrock code: I- Smoothed Particle Hydrodynamics on GPUs

LLMPerf: GPU Performance Modeling meets Large Language Models

Hercules: A Compiler for Productive Programming of Heterogeneous Systems

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high performance computing on graphics processing units: hgpu.org

Multicore and GPU Algorithms for Nussinov RNA Folding

Pairwise Sequence Alignment for Very Long Sequences on GPUs

Acceleration of Diagrammatic Determinantal Quantum Monte Carlo Calculations using GPUs

GPU-accelerated automatic identification of robust beam setups for proton and carbon-ion radiotherapy

Recent source codes

Coccinelle: a C code transformation engine using SmPL for matches, refactorings, and bug fixing

DuoReduce: MLIR's benchmark

Shamrock: Multi-GPU hydrodynamics for astrophysics

LLMPerf: GPU Performance Modeling meets Large Language Models

Hercules: A Compiler for Productive Programming of Heterogeneous Systems

Celerity Runtime: High-level C++ for Accelerator Clusters

wgpy: WebGL accelerated numpy-compatible array library for web browser

Microbenchmarking OpenMP target offload with Catch2

SUperman: Highly Efficient Permanent Computation Library

TransCL: An Automatic CUDA-to-OpenCL Programs Transformation Framework

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