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Multicore and GPU Algorithms for Nussinov RNA Folding

J. Li, S. Ranka, S. Sahni

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Tags: Biology, CUDA, nVidia, nVidia Tesla C2050, RNA

April 3, 2014 by hgpu

Pairwise Sequence Alignment for Very Long Sequences on GPUs

J. Li, S. Ranka, S. Sahni

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Tags: CUDA, Genetics, nVidia, nVidia Tesla C2050, Sequence alignment, Smith-Waterman algorithm

April 2, 2014 by hgpu

Acceleration of Diagrammatic Determinantal Quantum Monte Carlo Calculations using GPUs

M. Schmitt, I. Bethune, P. Haase, T. Pruschke

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Tags: CUDA, Monte Carlo simulation, nVidia, nVidia Tesla C2050, Physics, Quantum Physics

April 2, 2014 by hgpu

GPU-accelerated automatic identification of robust beam setups for proton and carbon-ion radiotherapy

F. Ammazzalorso, T. Bednarz, U. Jelen

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Tags: Medicine, nVidia, nVidia Tesla C2050, OpenCL, Radiotherapy

March 28, 2014 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Multicore and GPU Algorithms for Nussinov RNA Folding

Pairwise Sequence Alignment for Very Long Sequences on GPUs

Acceleration of Diagrammatic Determinantal Quantum Monte Carlo Calculations using GPUs

GPU-accelerated automatic identification of robust beam setups for proton and carbon-ion radiotherapy

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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