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Validation of the PyGBe code for Poisson-Boltzmann equation with boundary element methods

Christopher Cooper, Lorena A. Barba

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Tags: Bioinformatics, Biophysics, Boltzmann equation, Computational Physics, Computer science, CUDA, Electrostatics, nVidia, Package, Physics, Poisson Boltzmann, Python, Tesla C2075

January 31, 2013 by hgpu

Teaching cardiac electrophysiology modeling to undergraduate students: laboratory exercises and GPU programming for the study of arrhythmias and spiral wave dynamics

Ezio Bartocci, Rupinder Singh, Frederick B. von Stein, Avessie Amedome, Alan Joseph J. Caceres, Juan Castillo, Evan Closser, Gabriel Deards, Andriy Goltsev, Roumwelle Sta. Ines, Cem Isbilir, Joan K. Marc, Diquan Moore, Dana Pardi, Sandeep Sadhu, Samuel Sanchez, Pooja Sharma, Anoopa Singh, Joshua Rogers, Aron Wolinetz, Terri Grosso-Applewhite, Kai Zhao, Andrew B. Filipski, Robert F. Gilmour, Jr., Radu Grosu, James Glimm, Scott A. Smolka, Elizabeth M. Cherry, Edmund M. Clarke, Nancy Griffeth, Flavio H. Fenton

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Tags: CUDA, Heart, Medicine, nVidia, Package

January 31, 2013 by hgpu

Parallel GPGPU Evaluation of Small Angle X-ray Scattering Profiles in a Markov Chain Monte Carlo Framework

Lubomir D. Antonov, Christian Andreetta, Thomas Hamelryck

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Tags: Algorithms, Biology, Medicine, nVidia, nVidia GeForce GTX 560 Ti, OpenCL, Package

January 30, 2013 by hgpu

Efficient Implementation of MrBayes on multi-GPU

Jie Bao, Hongju Xia, Jianfu Zhou, Xiaoguang Liu, Gang Wang

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Tags: Bayesian, Biology, CUDA, GPU cluster, nVidia, nVidia GeForce GTX 480, Package, Task scheduling

January 28, 2013 by hgpu

Locality-Aware Work Stealing on Multi-CPU and Multi-GPU Architectures

Thierry Gautier, Joao V. F. Lima, Nicolas Maillard, Bruno Raffin

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Tags: Computer science, CUDA, Factorization, Heterogeneous systems, Linear Algebra, nVidia, Package, Tesla C2050

January 25, 2013 by hgpu

Implementing Open-Source CUDA Runtime

Shinpei Kato

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Tags: Computer science, CUDA, nVidia, Operating systems, Package

January 23, 2013 by hgpu

Application of GPU Smooth Particle Hydrodynamics: Wave Runup and Overtopping on Composite Slopes

Billy L. Edge, Margery F. Overton, Robert A. Dalrymple, Alexis Herault, Giuseppe Bilotta, M. Onur Kurum, Kevin Gamiel

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Tags: CUDA, Earth and Space Sciences, Fluid dynamics, nVidia, Package

January 17, 2013 by hgpu

Interleaving and Lock-Step Semantics for Analysis and Verification of GPU Kernels

Peter Collingbourne, Alastair F. Donaldson, Jeroen Ketema, Shaz Qadeer

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Tags: Benchmarking, Computer science, nVidia, nVidia GeForce 9400 M, OpenCL, Package

January 15, 2013 by hgpu

Probabilistic View-based 3D Curve Skeleton Computation on the GPU

Jacek Kustra, Andrei Jalba, Alexandru Telea

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Tags: Algorithms, Computer vision, CUDA, Image processing, nVidia, nVidia GeForce GT 330 M, OpenGL, Package, Stereo vision

January 11, 2013 by hgpu

Long Timestep Molecular Dynamics on the Graphical Processing Unit

James C. Sweet, Ronald J. Nowling, Trevor Cickovski, Christopher R. Sweet, Vijay S. Pande, Jesus A. Izaguirre

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Tags: Biology, Chemistry, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 580, OpenCL, Package

January 4, 2013 by hgpu

Programming CUDA and OpenCL: A Case Study Using Modern C++ Libraries

Denis Demidov, Karsten Ahnert, Karl Rupp, Peter Gottschling

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Tags: ATI, ATI Radeon HD 7970, Computational Physics, Computer science, CUDA, Differential equations, Mathematical Software, nVidia, ODEs, OpenCL, Ordinary differential equations, Package, Tesla C2070

January 2, 2013 by hgpu

KFusion: Obtaining Modularity and Performance with Regards to General Purpose GPU Computing and Co-processors

Liam Kiemele

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Tags: Compilers, Computer science, nVidia, OpenCL, Package, Performance, Tesla C2075, Thesis

December 20, 2012 by hgpu

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

GPU plugin for PySCF

Python-Based Quantum Chemistry Calculations with GPU Acceleration

QArray

QArray: a GPU-accelerated constant capacitance model simulator for large quantum dot arrays

Celerity: High-level C++ for Accelerator Clusters

Balancing Tracking Granularity and Parallelism in Many-Task Systems: The Horizons Approach

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

Parallel Gaussian process with kernel approximation in CUDA

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