high performance computing on graphics processing units: hgpu.org

Styliani Loukatou, Louis Papageorgiou, Paraskevas Fakourelis, Arianna Filntisi, Eleftheria Polychronidou, Ioannis Bassis, Vasileios Megalooikonomou, Wojciech Makalowski, Dimitrios Vlachakis, Sophia Kossida

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Tags: Bioinformatics, Biology, Chemistry, CUDA, Medicine, Molecular dynamics, nVidia, OpenCL, Physics

July 4, 2014 by hgpu

Exploiting parallel features of modern computer architectures in bioinformatics: applications to genetics, structure comparison and large graph analysis

Guillaume Chapuis

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Tags: Algorithms, Bioinformatics, Biology, CUDA, Genetics, Graph theory, nVidia, Path problems, Tesla C2050, Thesis

July 3, 2014 by hgpu

Parallelizing the cellular potts model on GPU and multi-core CPU: An OpenCL cross-platform study

Chao Yu, Bo Yang

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Tags: ATI, ATI Radeon HD 7870, Biology, Computer science, OpenCL

July 1, 2014 by hgpu

Various String Matching Algorithms for DNA Sequences to Detect Breast Cancer using CUDA Processors

Nagaveni V, G T Raju

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Tags: Algorithms, Bioinformatics, Biology, CUDA, Databases, Medicine, nVidia, String matching, Tesla C2070

June 28, 2014 by hgpu

An efficient parallel algorithm for accelerating computational protein design

Yichao Zhou, Wei Xu, Bruce R. Donald, Jianyang Zeng

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Tags: Algorithms, Bioinformatics, Biology, CUDA, Java, nVidia, Package, Tesla K20

June 23, 2014 by hgpu

Fast Sequence Alignment Method Using CUDA-enabled GPU

Yeim-Kuan Chang, De-Yu Chen

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Tags: Bioinformatics, Biology, CUDA, nVidia, Sequence alignment, Smith-Waterman algorithm, Tesla C1060

June 19, 2014 by hgpu

T81 558: Applications of Deep Neural Networks

Applications of Deep Neural Networks

Voxelization Using Optimal Scanline

A Comparison of Optimal Scanline Voxelization Algorithms

pyschedcl-concurrent: A Scheduling Framework that leverages concurrency in data parallel systems

PySchedCL: Leveraging Concurrency in Heterogeneous Data-Parallel Systems

HPX - The C++ Standard Library for Parallelism and Concurrency

HPX – The C++ Standard Library for Parallelism and Concurrency

CS Roofline Toolkit

Accelerating High-Order Stencils on GPUs

Hierarchical Roofline Analysis: How to Collect Data using Performance Tools on Intel CPUs and NVIDIA GPUs

Towards automated kernel selection in machine learning systems: Supplementary code and dataset

Performance portability through machine learning guided kernel selection in SYCL libraries

Montage: A Neural Network Language Model-Guided JavaScript Engine Fuzzer

CRAC: Checkpoint-Restart Architecture for CUDA Streams and UVM

CRAC: Checkpoint-Restart Architecture for CUDA with Streams and UVM

Empirical Roofline Toolkit

8 Steps to 3.7 TFLOP/s on NVIDIA V100 GPU: Roofline Analysis and Other Tricks

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* * *

2020

December

10-14

Virtually in Barcelona, Spain

The 18th International Conference on High Performance Computing & Simulation (HPCS), 2020

2020

November

24-27

Naha, Okinawa, Japan

The Fifth International Workshop on GPU Computing and AI (GCA), 2020

2021

January

13-15

Shenzhen, China

2nd International Conference on Frontiers of Intelligent Manufacturing and Automation (CFIMA’21), 2021

2020

December

14-16

Bangkok, Thailand

International Conference on Cyber Physical Systems and IoT (CPSIOT’20), 2020

2020

December

14-16

Bangkok, Thailand

International Conference on Wireless Networks and Embedded Systems (ICWNES’20), 2020

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high performance computing on graphics processing units: hgpu.org

Applications

Simulating spiking neural networks on massively parallel graphical processing units using a code generation approach with GeNN

Performance Efficient DNA Sequence Detection on GPU Using Parallel Pattern Matching Approach

A Multi-GPU Compute Solution for Optimized Genomic Selection Analysis

Parallelized Hierarchical Expected Matching Probability for Multiple Sequence Alignment

Visualization and Correction of Automated Segmentation, Tracking and Lineaging from 5-D Stem Cell Image Sequences

Analysis of Surface Folding Patterns of DICCCOLS Using the GPU-Optimized Geodesic Field Estimate

Molecular dynamics simulations through GPU video games technologies

Exploiting parallel features of modern computer architectures in bioinformatics: applications to genetics, structure comparison and large graph analysis

Parallelizing the cellular potts model on GPU and multi-core CPU: An OpenCL cross-platform study

Various String Matching Algorithms for DNA Sequences to Detect Breast Cancer using CUDA Processors

An efficient parallel algorithm for accelerating computational protein design

Fast Sequence Alignment Method Using CUDA-enabled GPU

Recent source codes

T81 558: Applications of Deep Neural Networks

Voxelization Using Optimal Scanline

pyschedcl-concurrent: A Scheduling Framework that leverages concurrency in data parallel systems

HPX - The C++ Standard Library for Parallelism and Concurrency

CS Roofline Toolkit

Hierarchical Roofline Analysis: How to Collect Data using Performance Tools on Intel CPUs and NVIDIA GPUs

Towards automated kernel selection in machine learning systems: Supplementary code and dataset

Montage: A Neural Network Language Model-Guided JavaScript Engine Fuzzer

CRAC: Checkpoint-Restart Architecture for CUDA Streams and UVM

Empirical Roofline Toolkit

Most viewed papers (last 30 days)

Featured events

The 18th International Conference on High Performance Computing & Simulation (HPCS), 2020

The Fifth International Workshop on GPU Computing and AI (GCA), 2020

2nd International Conference on Frontiers of Intelligent Manufacturing and Automation (CFIMA’21), 2021

International Conference on Cyber Physical Systems and IoT (CPSIOT’20), 2020

International Conference on Wireless Networks and Embedded Systems (ICWNES’20), 2020