high performance computing on graphics processing units: hgpu.org

Applications

Automatic Selection of Sparse Matrix Representation on GPUs

Naser Sedaghati, Te Mu, Louis-Noel Pouchet, Srinivasan Parthasarathy, P. Sadayappan

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Tags: Computer science, CUDA, Machine learning, nVidia, nVidia GeForce GTX 580, Physics, Sparse matrix, Tesla K20, Tesla K40

June 14, 2015 by hgpu

Poisson-Boltzmann model for protein-surface electrostatic interactions and grid-convergence study using the PyGBe code

Christopher D. Cooper, Lorena A. Barba

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Tags: Biomolecules, Boltzmann equation, Computational Physics, CUDA, Electrostatics, nVidia, Package, Physics, Poisson Boltzmann, Python, Tesla C2075

June 14, 2015 by hgpu

Accelerated Nodal Discontinuous Galerkin Simulations for Reverse Time Migration with Large Clusters

Axel Modave, Amik St-Cyr, Wim A. Mulder, Tim Warburton

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Tags: ATI, ATI Radeon HD 7970, Computational Physics, CUDA, Geophysics, MPI, nVidia, nVidia GeForce GTX 980, OpenCL, Physics, Tesla K20, Tesla K40

June 5, 2015 by hgpu

Quantum Chemistry for Solvated Molecules on Graphical Processing Units (GPUs) using Polarizable Continuum Models

Fang Liu, Nathan Luehr, Heather J. Kulik, Todd J. Martinez

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Tags: Biomolecules, Chemical Physics, Chemistry, CUDA, nVidia, nVidia GeForce GTX Titan, Physics

June 1, 2015 by hgpu

Lensed: a code for the forward reconstruction of lenses and sources from strong lensing observations

Nicolas Tessore, Fabio Bellagamba, R. Benton Metcalf

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Tags: Astrophysics, OpenCL, Package, Rendering

May 29, 2015 by hgpu

Particle-in-Cell Laser-Plasma Simulation on Xeon Phi Coprocessors

I.A. Surmin, S.I. Bastrakov, E.S. Efimenko, A.A. Gonoskov, A.V. Korzhimanov, I.B. Meyerov

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Tags: Benchmarking, Computational Physics, Intel Xeon Phi, Particle-in-cell methods, Physics, Plasma physics

May 28, 2015 by hgpu

Kalman Filter Tracking on Parallel Architectures

Giuseppe Cerati, Peter Elmer, Steven Lantz, Kevin McDermott, Dan Riley, Matevz Tadel, Peter Wittich, Frank Wurthwein, Avi Yagil

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Tags: Instrumentation and Detectors, Intel Xeon Phi, OpenMP, Physics

May 20, 2015 by hgpu

The 3D Flow Field Around an Embedded Planet

Jeffrey Fung, Pawel Artymowicz, Yanqin Wu (Toronto)

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Tags: Astrophysics, CUDA, Earth and Planetary Astrophysics, Fluid dynamics, nVidia, nVidia GeForce GTX Titan

May 15, 2015 by hgpu

GPU-accelerated micromagnetic simulations using cloud computing

C. L. Jermain, G. E. Rowlands, R. A. Buhrman, D. C. Ralph

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Tags: Cloud, Computational Physics, CUDA, nVidia, nVidia GeForce GTX 770, nVidia GRID K520, Package, Physics, Python

May 10, 2015 by hgpu

PyTransit: Fast and Easy Exoplanet Transit Modelling in Python

Hannu Parviainen

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Tags: Astrophysics, Earth and Planetary Astrophysics, OpenCL, Package, Python

May 3, 2015 by hgpu

NBODY6++GPU: Ready for the gravitational million-body problem

Long Wang, Rainer Spurzem, Sverre Aarseth, Keigo Nitadori, Peter Berczik, M.B.N. Kouwenhoven, Thorsten Naab

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Tags: Astrophysics, CUDA, Instrumentation and Methods for Astrophysics, nVidia, Package, Tesla K20

April 17, 2015 by hgpu

Early Experiences Running the 3D Stencil Jacobi Method in Intel Xeon Phi

Mario Hernandez, Jose M. Garcia, Jose M. Cecilia

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Tags: Computer science, Intel Xeon Phi, Physics, Stencil computation

April 8, 2015 by hgpu

Creating a Dataset for High-Performance Computing Code Translation using LLMs: A Bridge Between OpenMP Fortran and C+

CHARM-SYCL: New Unified Programming Environment for Multiple Accelerator Types

AFOCL: Portable OpenCL Programming of FPGAs via Automated Built-in Kernel Management

pp-template: Template for Performance-Portable code development, targeting HOST-DEVICE computer architectures

An approach to performance portability through generic programming

Redco: A Lightweight Tool to Automate Distributed Training

Redco: A Lightweight Tool to Automate Distributed Training of LLMs on Any GPU/TPUs

OpenRAND: Reproducible Random Number For Parallel Computations

OpenRAND: A Performance Portable, Reproducible Random Number Generation Library for Parallel Computations

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high performance computing on graphics processing units: hgpu.org

Applications

Automatic Selection of Sparse Matrix Representation on GPUs

Poisson-Boltzmann model for protein-surface electrostatic interactions and grid-convergence study using the PyGBe code

Accelerated Nodal Discontinuous Galerkin Simulations for Reverse Time Migration with Large Clusters

Quantum Chemistry for Solvated Molecules on Graphical Processing Units (GPUs) using Polarizable Continuum Models

Lensed: a code for the forward reconstruction of lenses and sources from strong lensing observations

Particle-in-Cell Laser-Plasma Simulation on Xeon Phi Coprocessors

Kalman Filter Tracking on Parallel Architectures

The 3D Flow Field Around an Embedded Planet

PyTransit: Fast and Easy Exoplanet Transit Modelling in Python

NBODY6++GPU: Ready for the gravitational million-body problem

Early Experiences Running the 3D Stencil Jacobi Method in Intel Xeon Phi

Recent source codes

miniBUDE: A BUDE virtual-screening benchmark, in many programming models

gossip: Efficient Communication Primitives for Multi-GPU Systems

GT4Py: GridTools for Python

AUCMEDI: a framework for Automated Classification of Medical Images

Creating a Dataset for High-Performance Computing Code Translation using LLMs: A Bridge Between OpenMP Fortran and C+

CHARM-SYCL: New Unified Programming Environment for Multiple Accelerator Types

AFOCL: Portable OpenCL Programming of FPGAs via Automated Built-in Kernel Management

pp-template: Template for Performance-Portable code development, targeting HOST-DEVICE computer architectures

Redco: A Lightweight Tool to Automate Distributed Training

OpenRAND: Reproducible Random Number For Parallel Computations

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