high performance computing on graphics processing units: hgpu.org

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Investigation of General-Purpose Computing on Graphics Processing Units and its Application to the Finite Element Analysis of Electromagnetic Problems

Huan-Ting Meng

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Tags: CUDA, Electrodynamics, FEM, Finite element method, MPI, nVidia, Optics, Physics, Tesla M2090, Thesis

October 31, 2015 by hgpu

Overlap fermions on GPUs

Nigel Cundy, Weonjong Lee

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Tags: CUDA, High Energy Physics - Lattice, nVidia, nVidia GeForce GTX Titan, Physics

October 27, 2015 by hgpu

Modern Gyrokinetic Particle-In-Cell Simulation of Fusion Plasmas on Top Supercomputers

Bei Wang, Stephane Ethier, William Tang, Khaled Ibrahim, Kamesh Madduri, Samuel Williams, Leonid Oliker

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Tags: CUDA, Heterogeneous systems, Intel Xeon Phi, Laplace and Poisson equation, nVidia, Particle-in-cell methods, Physics, Plasma physics, Poisson equation, Tesla K20

October 25, 2015 by hgpu

Sapporo2: A versatile direct N-body library

Jeroen Bedorf, Evghenii Gaburov, Simon Portegies Zwart

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Tags: Astrophysics, ATI, ATI Radeon HD 7970, CUDA, Instrumentation and Methods for Astrophysics, Mathematical Software, N-body simulation, nVidia, nVidia GeForce GTX 680, OpenCL, Package, Tesla K20

October 16, 2015 by hgpu

Performance Analysis of an Astrophysical Simulation Code on the Intel Xeon Phi Architecture

Vahid Noormofidi, Susan R. Atlas, Huaiyu Duan

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Tags: Astrophysics, Computer science, Intel Xeon Phi, MPI, OpenMP, Performance

October 11, 2015 by hgpu

Kinematic Modelling of Disc Galaxies using Graphics Processing Units

Georgios Bekiaris, Karl Glazebrook, Christopher J. Fluke, Roberto Abraham

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Tags: Algorithms, Astrophysics, CUDA, nVidia, Package, Tesla C2070, Tesla K40

October 8, 2015 by hgpu

The Dynamical Kernel Scheduler – Part 1

Andreas Adelmann, Uldis Locans, Andreas Suter

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Tags: Algorithms, Computational Physics, CUDA, FFT, Intel Xeon Phi, Monte Carlo simulation, nVidia, OpenCL, OpenMP, Physics

September 29, 2015 by hgpu

A GPU accelerated Barnes-Hut Tree Code for FLASH4

Gunther Lukat, Robi Banerjee

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Tags: Astrophysics, CUDA, Fortran, Gravitation, Instrumentation and Methods for Astrophysics, nVidia, Package, Python, Tesla C2075

September 26, 2015 by hgpu

Scalable Metropolis Monte Carlo for simulation of hard shapes

Joshua A. Anderson, M. Eric Irrgang, Sharon C. Glotzer

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Tags: Benchmarking, Chemistry, Condensed matter, CUDA, Monte Carlo simulation, nVidia, Physics, Soft Condensed Matter, Tesla K20

September 17, 2015 by hgpu

Parallel waveform extraction algorithms for the Cherenkov Telescope Array Real-Time Analysis

Andrea Zoli, Andrea Bulgarelli, Adriano De Rosa, Alessio Aboudan, Valentina Fioretti, Giovanni De Cesare, Ramin Marx

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Tags: Astrophysics, FPGA, nVidia, OpenCL, OpenMP, Tesla K40

September 9, 2015 by hgpu

Advanced Simulation Library: Expanding software ecosystem for the DSP/FPGA/GPU market

Avtech Scientific

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Tags: DSP, FPGA, OpenCL, Package, Physics, Presentation

September 3, 2015 by hgpu

Fast GPU-based calculations in few-body quantum scattering

V.N. Pomerantsev, V.I. Kukulin, O.A. Rubtsova, S.K. Sakhiev

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Tags: Computational Physics, CUDA, Integral equations, nVidia, nVidia GeForce GTX 670, Physics

September 3, 2015 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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high performance computing on graphics processing units: hgpu.org

Applications

Investigation of General-Purpose Computing on Graphics Processing Units and its Application to the Finite Element Analysis of Electromagnetic Problems

Overlap fermions on GPUs

Modern Gyrokinetic Particle-In-Cell Simulation of Fusion Plasmas on Top Supercomputers

Sapporo2: A versatile direct N-body library

Performance Analysis of an Astrophysical Simulation Code on the Intel Xeon Phi Architecture

Kinematic Modelling of Disc Galaxies using Graphics Processing Units

The Dynamical Kernel Scheduler – Part 1

A GPU accelerated Barnes-Hut Tree Code for FLASH4

Scalable Metropolis Monte Carlo for simulation of hard shapes

Parallel waveform extraction algorithms for the Cherenkov Telescope Array Real-Time Analysis

Advanced Simulation Library: Expanding software ecosystem for the DSP/FPGA/GPU market

Fast GPU-based calculations in few-body quantum scattering

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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