high performance computing on graphics processing units: hgpu.org

Applications

Comprehensive Evaluations of Cone-beam CT dose in Image-guided Radiation Therapy via GPU-based Monte Carlo simulations

Davide Montanari, Enrica Scolari, Chiara Silvestri, Yan J. Graves, Hao Yan, Laura Cervino, Roger Rice, Steve B. Jiang, Xun Jia

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Tags: Computed tomography, CT, CUDA, Medical Physics, Medicine, Monte Carlo simulation, nVidia, nVidia GeForce GTX 590, Physics

September 20, 2013 by hgpu

Parallel Computing Methods For Particle Accelerator Design

Diana Andreea Popescu

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Tags: Algorithms, CUDA, High Energy Physics - Experiment, nVidia, nVidia Quadro K 2000, OpenMP, Package, Physics, Tesla K20, Thesis

September 17, 2013 by hgpu

A biomolecular electrostatics solver using Python, GPUs and boundary elements that can handle solvent-filled cavities and Stern layers

Christopher D. Cooper, Jaydeep P. Bardhan, L. A. Barba

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Tags: Biomolecules, Boltzmann equation, Computational Physics, CUDA, Electrostatics, Intel Phi, nVidia, Package, Physics, Poisson Boltzmann, Python, Tesla C2075

September 17, 2013 by hgpu

Accelerating moderately stiff chemical kinetics in reactive-flow simulations using GPUs

Kyle E Niemeyer, Chih-Jen Sung

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Tags: Algorithms, Computational Physics, CUDA, nVidia, Physics, Tesla C2075

September 13, 2013 by hgpu

Neptune: An astrophysical smooth particle hydrodynamics code for massively parallel computer architectures

Prashanth Jaikumar

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Tags: Astrophysics, Gravitation, OpenCL, Thesis

September 13, 2013 by hgpu

Fast computation of computer-generated hologram using Xeon Phi coprocessor

Koki Murano, Tomoyoshi Shimobaba, Atsushi Sugiyama, Naoki Takada, Takashi Kakue, Minoru Oikawa, Tomoyoshi Ito

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Tags: Algorithms, Computational Physics, Computer holography, CUDA, Intel Phi, nVidia, Performance, Physics, Tesla K20

September 13, 2013 by hgpu

Coherent transport by adiabatic passage on atom chips

T. Morgan, L. J. O'Riordan, N. Crowley, B. O'Sullivan, Th. Busch

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Tags: CUDA, nVidia, nVidia GeForce GTX 580, Physics, Quantum Physics

September 11, 2013 by hgpu

Implementation of PDE models of cardiac dynamics on GPUs using OpenCL

Christopher D. Marcotte, Roman O. Grigoriev

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Tags: Chaotic Dynamics, Computational Physics, Nonlinear Sciences, nVidia, nVidia GeForce GTX 680, OpenCL, Partial differential equations, PDEs, Physics

September 9, 2013 by hgpu

GPU Accelerated Particle Visualization with Splotch

Marzia Rivi, Claudio Gheller, Mel Krokos, Klaus Dolag, Martin Reinecke

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Tags: Algorithms, Astrophysics, CUDA, Instrumentation and Methods for Astrophysics, MPI, Numerical simulation, nVidia, Rendering, Tesla M2090, Visualization

September 9, 2013 by hgpu

Percolation study of samples on 2D lattices using GPUs

D.A. Matoz-Fernandez, P.M. Pasinetti, A.J. Ramirez-Pastor

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Tags: CUDA, Materials Science, Mathematics, nVidia, nVidia GeForce GTX 480, Physics

September 6, 2013 by hgpu

The discrete dipole approximation code DDscat.C++: features, limitations and plans

V. Ya. Choliy

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Tags: Astrophysics, CUDA, Fortran, nVidia, nVidia GeForce GTX 260, Package

September 4, 2013 by hgpu

Detecting multiple periodicities in observational data with the multi-frequency periodogram. II. Frequency Decomposer, a parallelized time-series analysis algorithm

Roman V. Baluev

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Tags: Algorithms, Astrophysics, CUDA, Instrumentation and Methods for Astrophysics, nVidia, nVidia GeForce GT 210, Package

September 4, 2013 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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high performance computing on graphics processing units: hgpu.org

Applications

Comprehensive Evaluations of Cone-beam CT dose in Image-guided Radiation Therapy via GPU-based Monte Carlo simulations

Parallel Computing Methods For Particle Accelerator Design

A biomolecular electrostatics solver using Python, GPUs and boundary elements that can handle solvent-filled cavities and Stern layers

Accelerating moderately stiff chemical kinetics in reactive-flow simulations using GPUs

Neptune: An astrophysical smooth particle hydrodynamics code for massively parallel computer architectures

Fast computation of computer-generated hologram using Xeon Phi coprocessor

Coherent transport by adiabatic passage on atom chips

Implementation of PDE models of cardiac dynamics on GPUs using OpenCL

GPU Accelerated Particle Visualization with Splotch

Percolation study of samples on 2D lattices using GPUs

The discrete dipole approximation code DDscat.C++: features, limitations and plans

Detecting multiple periodicities in observational data with the multi-frequency periodogram. II. Frequency Decomposer, a parallelized time-series analysis algorithm

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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