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Application of GPGPU for Acceleration of Short DNA Sequence Alignment in Unipro UGENE Project

Konstantin Okonechinkov, German Grekhov, Konstantin Stepanyuk, Mikhail Fursov

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Tags: Algorithms, Bioinformatics, Biology, nVidia, OpenCL, Package, Sequence alignment, Tesla C1060, Tesla C2070

November 22, 2011 by hgpu

Parallelizing Multicore Cache Simulations using Heterogeneous Computing on General Purpose and Graphics Processors

Nikolaos Strikos, Georgios Keramidas, Stefanos Kaxiras

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Tags: Computer science, CUDA, Heterogeneous systems, Memory, nVidia, nVidia GeForce 8800 GTX

November 22, 2011 by hgpu

GPU-based Multi-start Local Search Algorithms

The Van Luong, Nouredine Melab, El-Ghazali Talbi

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Tags: Algorithms, Computer science, CUDA, Metaheuristics, nVidia, nVidia GeForce GTX 280, Optimization, Search

November 22, 2011 by hgpu

Using Graphics Processors for a High Performance Normalization of Gene Expressions

Andres Rodriguez, Oswaldo Trelles, Manuel Ujaldon

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce 9800 GX2

November 22, 2011 by hgpu

Dataflow-Based Implementation of Layered Sensing Applications

Shuvra Bhattacharyya, Chung-Ching Shen, William Plishker, Nimish Sane, Hsiang-Huang Wu, Ruirui Gu

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Tags: CUDA, Flow analysis, nVidia, nVidia GeForce GTX 260, Optimization, Sensing, Signal processing

November 22, 2011 by hgpu

Experiences with Achieving Portability across Heterogeneous Architectures

Lukasz G. Szafaryn, Todd Gamblin, Bronis R. de Supinski, Kevin Skadron

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Tags: Computer science, CUDA, Heterogeneous systems, nVidia, nVidia GeForce GTX 460, OpenMP, Performance

November 22, 2011 by hgpu

Superconducting proximity effect in graphene under inhomogeneous strain

Lucian Covaci, Francois Peeters

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Tags: Condensed matter, Mesoscale and Nanoscale Physics, nVidia, nVidia GeForce GTX 580, Physics

November 22, 2011 by hgpu

Online Adaptive Code Generation and Tuning

Ananta Tiwari, Jeffrey K. Hollingsworth

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Tags: Code generation, Computer science, Optimization

November 21, 2011 by hgpu

Issues in Heterogenenous GPU Clusters

Patrick Carpenter, William Symon

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Tags: Computer science, GPU cluster, Heterogeneous systems, Review

November 21, 2011 by hgpu

A new approach for sparse matrix vector product on NVIDIA GPUs

F. Vazquez, J. J. Fernandez, E. M. Garzon

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 295, Optimization, Sparse matrix

November 21, 2011 by hgpu

GPU-Based Image Processing Use Cases: A High-Level Approach

Volkmar Wieser, Clemens Grelck, Holger Schoner, Peter Haslinger, Karoly Bosa, Bernhard Moser

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Tags: Benchmarking, CUDA, Image processing, nVidia, nVidia GeForce GT 425 M, Software Engineering, Virtualization

November 21, 2011 by hgpu

CT image reconstruction with half precision floating-point values

Clemens Maass, Sven Steckmann, Matthias Baer, Lars Hillebrand, Willi A. Kalender, Marc Kachelriess

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Tags: Algorithms, Computed tomography, CT, CUDA, Image processing, Image reconstruction, Larrabee, Medicine, nVidia, nVidia GeForce GTX 280

November 21, 2011 by hgpu

Harness Engineering for LLM-Driven GPU Kernel Generation

CANNBot Skills

Compiler-Grounded Hierarchical Diagnosis for LLM-Based Triton Kernel Optimization

NVIDIA Object Oriented Agents

NVIDIA-labs OO Agents: Native Python Object-Oriented Agents

UniCoder: Unified Visual-to-Code Generation via Symbolic Rewards and Reference-Guided Code Optimization

CuFuzz: An API-Knowledge-Graph Coverage-Driven Fuzzing Framework for CUDA Libraries

AutoPass: Evidence-Guided LLM Agents for Compiler Performance Tuning

Probe-and-Refine Tuning of Repository Guidance for AI Coding Agents

Probe-and-Refine Tuning of Repository Guidance for Coding Agents

See all packages

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high performance computing on graphics processing units: hgpu.org

Applications

Application of GPGPU for Acceleration of Short DNA Sequence Alignment in Unipro UGENE Project

Parallelizing Multicore Cache Simulations using Heterogeneous Computing on General Purpose and Graphics Processors

GPU-based Multi-start Local Search Algorithms

Using Graphics Processors for a High Performance Normalization of Gene Expressions

Dataflow-Based Implementation of Layered Sensing Applications

Experiences with Achieving Portability across Heterogeneous Architectures

Superconducting proximity effect in graphene under inhomogeneous strain

Online Adaptive Code Generation and Tuning

Issues in Heterogenenous GPU Clusters

A new approach for sparse matrix vector product on NVIDIA GPUs

GPU-Based Image Processing Use Cases: A High-Level Approach

CT image reconstruction with half precision floating-point values

Recent source codes

TensorCorePTX: PTX Tensor Core GEMM Exploration

FlashPDE: Triton-fused PDE stencil kernels for physics-informed neural networks

PortLBM: Portable GPU-accelerated Lattice Boltzmann Method Simulations

Harness Engineering for LLM-Driven GPU Kernel Generation

CANNBot Skills

NVIDIA Object Oriented Agents

UniCoder: Unified Visual-to-Code Generation via Symbolic Rewards and Reference-Guided Code Optimization

CuFuzz: An API-Knowledge-Graph Coverage-Driven Fuzzing Framework for CUDA Libraries

AutoPass: Evidence-Guided LLM Agents for Compiler Performance Tuning

Probe-and-Refine Tuning of Repository Guidance for AI Coding Agents

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