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Simulation of stochastic processes using graphics hardware

Alison Barros, Euler Garcia, Rafael Morgado Silva

Tags: Langevin dynamics, nVidia, Physics, Stochastic simulation

January 25, 2011 by hgpu

Molecular dynamics simulations of the relaxation processes in the condensed matter on GPUs

I. V. Morozov, A. M. Kazennov, R. G. Bystryi, G. E. Norman, V. V. Pisarev, V. V. Stegailov

Tags: Molecular dynamics, nVidia, nVidia GeForce GTX 260, Physics

January 25, 2011 by hgpu

Efficient Parallel Implementation of Molecular Dynamics with Embedded Atom Method on Multi-core Platforms

Changjun Hu, Yali Liu, Jianjiang Li

Tags: Chemistry, Molecular dynamics, Molecular simulation, OpenMP

January 25, 2011 by hgpu

A Graphics Processing Unit Implementation of Coulomb Interaction in Molecular Dynamics

Prateek K. Jha, Rastko Sknepnek, Guillermo I. Guerrero-Garcia, Monica Olvera de la Cruz

Tags: Chemistry, Molecular dynamics

January 25, 2011 by hgpu

Multi-Level Ewald: A Hybrid Multigrid/Fast Fourier Transform Approach to the Electrostatic Particle-Mesh Problem

David S. Cerutti, David A. Case

Tags: Chemistry, Molecular dynamics, Molecular simulation

January 25, 2011 by hgpu

Parallel multiclass classification using SVMs on GPUs

Sergio H. Lopez, John R. Williams, Abel Sanchez

Tags: Computer science, Programming techniques

January 25, 2011 by hgpu

Fast Calculation of Electrostatic Potentials on the GPU or the ASIC MD-GRAPE-3

Tetsu Narumi, Kenji Yasuoka, Makoto Taiji, Francesco Zerbetto, Siegfried Hofinger

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Tags: Biomolecules, Biophysics, Chemistry, Molecular simulation, nVidia, nVidia GeForce GTX 280, Poisson Boltzmann

January 25, 2011 by hgpu

A New Era in Scientific Computing: Domain Decomposition Methods in Hybrid CPU-GPU Architectures

M. Papadrakakis, G. Stavroulakis, A. Karatarakis

Tags: Computational Engineering, Computer science, Finite difference, Finite element method

January 25, 2011 by hgpu

On the Visualization of Social and other Scale-Free Networks

Yuntao Jia, Jared Hoberock, Michael Garland, John C. Hart

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Tags: Algorithms, Computer science, Visualization

January 24, 2011 by hgpu

MLS-based scalar fields over triangle meshes and their application in mesh processing

Jingyi Jin, Michael Garland, Edgar A. Ramos

Tags: 3D Graphics and Realism, Algorithms, Computer science, Triangular meshes

January 24, 2011 by hgpu

CUDASA: Compute Unified Device and Systems Architecture

M. Strengert, C. Muller, C. Dachsbacher, and T. Ertl

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Tags: Computer science, CUDA, GPU cluster, High-level Languages, nVidia, nVidia GeForce 8800 GT, nVidia GeForce 8800 GTX, nVidia Quadro FX 5600

January 24, 2011 by hgpu

Sparse regularization in MRI iterative reconstruction using GPUs

Yue Zhuo, Bradley Sutton, Xiao-Long Wu, Justin Haldar, Wen-mei Hwu, Zhipei Liang

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Tags: CUDA, Image processing, Image reconstruction, MRI, nVidia, nVidia GeForce GTX 280, Sparse matrix

January 24, 2011 by hgpu

PROM: an open-source software framework to enhance the robustness and performance of predictive models against such changes during deployment

Enhancing Deployment-Time Predictive Model Robustness for Code Analysis and Optimization

DeepSpeed: a deep learning optimization library that makes distributed training and inference easy, efficient, and effective

Scalable Access-Pattern Aware I/O Acceleration and Multi-Tiered Data Management for HPC and AI Workloads

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

Analyzing the Performance Portability of SYCL across CPUs, GPUs, and Hybrid Systems with Protein Database Search

tdg-benchs: benchmarks used to test the performance of taskgraph

Leveraging the potential of task-based programming with OpenMP task graphs

See all packages

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high performance computing on graphics processing units: hgpu.org

Applications

Simulation of stochastic processes using graphics hardware

Molecular dynamics simulations of the relaxation processes in the condensed matter on GPUs

Efficient Parallel Implementation of Molecular Dynamics with Embedded Atom Method on Multi-core Platforms

A Graphics Processing Unit Implementation of Coulomb Interaction in Molecular Dynamics

Multi-Level Ewald: A Hybrid Multigrid/Fast Fourier Transform Approach to the Electrostatic Particle-Mesh Problem

Parallel multiclass classification using SVMs on GPUs

Fast Calculation of Electrostatic Potentials on the GPU or the ASIC MD-GRAPE-3

A New Era in Scientific Computing: Domain Decomposition Methods in Hybrid CPU-GPU Architectures

On the Visualization of Social and other Scale-Free Networks

MLS-based scalar fields over triangle meshes and their application in mesh processing

CUDASA: Compute Unified Device and Systems Architecture

Sparse regularization in MRI iterative reconstruction using GPUs

Recent source codes

PROM: an open-source software framework to enhance the robustness and performance of predictive models against such changes during deployment

DeepSpeed: a deep learning optimization library that makes distributed training and inference easy, efficient, and effective

HPX: a C++ Standard Library for Concurrency and Parallelism

TorchQC: Quantum Dynamics and Machine Learning

Matrix multiplication using Tensor Cores in CUDA

CPP Joules: Energy Measurement tool for CPP/CUDA programs

HPC-Coder-v2

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

tdg-benchs: benchmarks used to test the performance of taskgraph

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