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Parallel GPGPU Evaluation of Small Angle X-ray Scattering Profiles in a Markov Chain Monte Carlo Framework

Lubomir D. Antonov, Christian Andreetta, Thomas Hamelryck

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Tags: Algorithms, Biology, Medicine, nVidia, nVidia GeForce GTX 560 Ti, OpenCL, Package

January 30, 2013 by hgpu

Faster Algorithms for RNA-folding using the Four-Russians method

Balaji Venkatachalam, Yelena Frid, Dan Gusfield

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Tags: Algorithms, Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 550 Ti, RNA, Tesla C2070

January 30, 2013 by hgpu

Many-threaded Differential Evolution on the GPU

Pavel Kromer, Jan Platos, Vaclav Snasel, Ajith Abraham

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Tags: Algorithms, Computer science, CUDA, Differential evolution, Metaheuristics, nVidia, Tesla C2050

January 30, 2013 by hgpu

Selection algorithm of graphic accelerators in heterogeneous cluster for optimization computing

A. M. Lavreniuk, M. S. Lavreniuk

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Tags: Algorithms, Computer science, Heterogeneous systems, nVidia, nVidia GeForce GTX 260, OpenCL, Tesla M2050

January 26, 2013 by hgpu

Orthogonalization on a General Purpose Graphics Processing Unit with Double Double and Quad Double Arithmetic

Jan Verschelde, Genady Yoffe

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Tags: Algorithms, CUDA, Extended precision, Mathematics, nVidia, Tesla C2050

January 25, 2013 by hgpu

GPU-based 3D Wavelet Transform

Vicente Galiano, Otoniel Lopez, Manuel P. Malumbres, Hector Migallon

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Tags: Algorithms, Compression, Computer science, CUDA, nVidia, nVidia GeForce GT 540 M, nVidia GeForce GTX 280, Wavelet

January 24, 2013 by hgpu

Accelerating Image Reconstruction in Dual-Head PET System by GPU and Symmetry Properties

Cheng-Ying Chou, Yun Dong, Yukai Hung, Yu-Jiun Kao, Weichung Wang, Chien-Min Kao, Chin-Tu Chen

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Tags: Algorithms, CUDA, Image processing, Image reconstruction, Medicine, nVidia, PET, Tesla C2070, Tomography

January 20, 2013 by hgpu

GPU-accelererated regularisation of large diffusion-tensor volumes

Tuomo Valkonen, Manfred Liebmann

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Tags: Algorithms, Diffusion tensor, Image processing, Medicine, nVidia, nVidia GeForce GTX 480, OpenACC, Tesla C2070

January 18, 2013 by hgpu

Flip-Flop: Convex Hull Construction via Star-Shaped Polyhedron in 3D

Mingcen Gao, Thanh-Tung Cao, Tiow-Seng Tan, Zhiyong Huang

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 580, Triangular meshes

January 18, 2013 by hgpu

Performance Analysis and Tuning For: General-Purpose Graphics Processing Units (GPGPU)

Hyesoon Kim, Richard Vuduc, Wen-mei Hwu, Sara Baghsorkhi

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Tags: Algorithms, Book, Computer science, CUDA, Fast multipole method, N-body simulation, nVidia, OpenCL, Optimization, Particle simulation, Performance, Review

January 17, 2013 by hgpu

A GPU Based Implementation of Side Effect Analysis

Sudhakar Sah, Vinay G. Vaidya

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Tags: Algorithms, Compilers, Computer science, CUDA, nVidia, nVidia GeForce GTX 480

January 17, 2013 by hgpu

Burrows-Wheeler Aligner: A Parallel Approach

Sheridan Lee Wright

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Tags: Algorithms, Bioinformatics, Biology, CUDA, MPI, nVidia, Sequence alignment, Thesis

January 16, 2013 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Programming

Parallel GPGPU Evaluation of Small Angle X-ray Scattering Profiles in a Markov Chain Monte Carlo Framework

Faster Algorithms for RNA-folding using the Four-Russians method

Many-threaded Differential Evolution on the GPU

Selection algorithm of graphic accelerators in heterogeneous cluster for optimization computing

Orthogonalization on a General Purpose Graphics Processing Unit with Double Double and Quad Double Arithmetic

GPU-based 3D Wavelet Transform

Accelerating Image Reconstruction in Dual-Head PET System by GPU and Symmetry Properties

GPU-accelererated regularisation of large diffusion-tensor volumes

Flip-Flop: Convex Hull Construction via Star-Shaped Polyhedron in 3D

Performance Analysis and Tuning For: General-Purpose Graphics Processing Units (GPGPU)

A GPU Based Implementation of Side Effect Analysis

Burrows-Wheeler Aligner: A Parallel Approach

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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