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High performance transcription factor-DNA docking with GPU computing

Jiadong Wu, Bo Hong, Takako Takeda, Jun-tao Guo

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Tags: Algorithms, Benchmarking, Bioinformatics, Biology, CUDA, Genetics, GPU cluster, nVidia, Tesla M2070

August 20, 2012 by hgpu

A GPU-accelerated Branch-and-Bound Algorithm for the Flow-Shop Scheduling Problem

Melab Nouredine, Imen Chakroun, Mezmaz Mohand, Daniel Tuyttens

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Tags: Algorithms, Computer science, CUDA, nVidia, Optimization, Tesla C2050

August 20, 2012 by hgpu

An OpenCL Method of Parallel Sorting Algorithms for GPU Architecture

Krishnahari Thouti, S. R. Sathe

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Tags: Algorithms, Computer science, nVidia, nVidia Quadro FX 3800, OpenCL, Sorting

August 18, 2012 by hgpu

GPU-Based Computation of Discrete Periodic Centroidal Voronoi Tessellation in Hyperbolic Space

Liang Shuai, Xiaohu Guo, Miao Jin

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Tags: 3D Graphics and Realism, Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 580, Tessellation, Voronoi diagram

August 18, 2012 by hgpu

DEM based simulation of concrete structures on GPU

Marie Durand, Philippe Marin, Francois Faure, Bruno Raffin

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Tags: Algorithms, Computer science, CUDA, Numerical simulation, nVidia, Tesla C2050

August 18, 2012 by hgpu

Binary Interval Search (BITS): A Scalable Algorithm for Counting Interval Intersections

Ryan M. Layer, Kevin Skadron, Gabriel Robins, Ira M. Hall, Aaron R. Quinlan

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Source codes

Tags: Algorithms, Bioinformatics, Biology, Computer science, CUDA, nVidia, Package, Search, Sequence alignment

August 17, 2012 by hgpu

GPU-Assisted Cryptography of Log-Structured Indices

Michael Warren Kirby

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Tags: Algorithms, Computer science, CUDA, Hashing, nVidia, nVidia GeForce 9400 M, nVidia GeForce GTS 450, nVidia GeForce GTX 480 M, nVidia GeForce GTX 550 Ti, Security, Thesis

August 15, 2012 by hgpu

A New Cooperative Evolutionary Multi-Swarm Optimizer Algorithm Based on CUDA Parallel Architecture Applied to Solve Engineering Optimization Problems

Daniel Leal Souza, Otavio Noura Teixeira, Dionne Cavalcante Monteiro, Roberto Celio Limao de Oliveira

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GT 330 M, Optimization, Particle swarm optimization

August 15, 2012 by hgpu

Large Scale Monte Carlo Tree Search on GPU

Kamil Marek Rocki

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Tags: Algorithms, Artificial intelligence, Computer science, CUDA, Games, nVidia, Optimization, Search, Tesla C2050, Thesis

August 11, 2012 by hgpu

Fine-Granular Parallel EBCOT and Optimization with CUDA for Digital Cinema Image Compression

Fang Wei, Qiu Cui, Ye Li

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Tags: Algorithms, Compression, CUDA, Image processing, JPEG2000, nVidia, nVidia GeForce GT 240, Optimization

August 10, 2012 by hgpu

Development of a GPU-accelerated MIKE 21 Solver for Water Wave Dynamics

Peter Edward Aackermann, Peter J. Dinesen Pedersen

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Tags: Algorithms, CUDA, Differential equations, Fluid dynamics, nVidia, nVidia GeForce GTX 590, Partial differential equations, PDEs, Thesis

August 10, 2012 by hgpu

Block-Relaxation Methods for 3D Constant-Coefficient Stencils on GPUs and Multicore CPUs

Manuel Rodriguez Rodriguez, Bobby Philip, Zhen Wang, Mark Berrill

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Tags: Algorithms, Computer science, CUDA, Differential equations, nVidia, Partial differential equations, PDEs, Tesla C2050, Tesla X2090

August 10, 2012 by hgpu

MATLAB Tensor Core models

Accurate Models of NVIDIA Tensor Cores

TritonForge: Transform PyTorch Operations into Optimized GPU Kernels with LLMs

TritonForge: Profiling-Guided Framework for Automated Triton Kernel Optimization

RLTune: Hybrid Learning and Optimization-Based Dynamic Scheduling for DL Workloads on Heterogeneous GPU Clusters

Hybrid Learning and Optimization-Based Dynamic Scheduling for DL Workloads on Heterogeneous GPU Clusters

tritonBLAS: A Lightweight Triton-based General Matrix Multiplication (GEMM) Library

tritonBLAS: Triton-based Analytical Approach for GEMM Kernel Parameter Selection

hls4ml: Machine learning on FPGAs using HLS

hls4ml: A Flexible, Open-Source Platform for Deep Learning Acceleration on Reconfigurable Hardware

NVIDIA Nemotron Parse 1.1

ThunderKittens: Tile primitives for speedy kernels

ParallelKittens: Systematic and Practical Simplification of Multi-GPU AI Kernels

Iris: AMD RAD's multi-GPU Triton-based framework for seamless multi-GPU programming

Iris: First-Class Multi-GPU Programming Experience in Triton

HipKittens: Fast and Furious AMD Kernels

Fortran xDSL dialects

An MLIR pipeline for offloading Fortran to FPGAs via OpenMP

See all packages

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high performance computing on graphics processing units: hgpu.org

Programming

High performance transcription factor-DNA docking with GPU computing

A GPU-accelerated Branch-and-Bound Algorithm for the Flow-Shop Scheduling Problem

An OpenCL Method of Parallel Sorting Algorithms for GPU Architecture

GPU-Based Computation of Discrete Periodic Centroidal Voronoi Tessellation in Hyperbolic Space

DEM based simulation of concrete structures on GPU

Binary Interval Search (BITS): A Scalable Algorithm for Counting Interval Intersections

GPU-Assisted Cryptography of Log-Structured Indices

A New Cooperative Evolutionary Multi-Swarm Optimizer Algorithm Based on CUDA Parallel Architecture Applied to Solve Engineering Optimization Problems

Large Scale Monte Carlo Tree Search on GPU

Fine-Granular Parallel EBCOT and Optimization with CUDA for Digital Cinema Image Compression

Development of a GPU-accelerated MIKE 21 Solver for Water Wave Dynamics

Block-Relaxation Methods for 3D Constant-Coefficient Stencils on GPUs and Multicore CPUs

Recent source codes

MATLAB Tensor Core models

TritonForge: Transform PyTorch Operations into Optimized GPU Kernels with LLMs

RLTune: Hybrid Learning and Optimization-Based Dynamic Scheduling for DL Workloads on Heterogeneous GPU Clusters

tritonBLAS: A Lightweight Triton-based General Matrix Multiplication (GEMM) Library

hls4ml: Machine learning on FPGAs using HLS

NVIDIA Nemotron Parse 1.1

ThunderKittens: Tile primitives for speedy kernels

Iris: AMD RAD's multi-GPU Triton-based framework for seamless multi-GPU programming

HipKittens: Fast and Furious AMD Kernels

Fortran xDSL dialects

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