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HUGO: Hierarchical mUlti-reference Genome cOmpression for aligned reads

Pinghao Li, Xiaoqian Jiang, Shuang Wang, Jihoon Kim, Hongkai Xiong, Lucila Ohno-Machado

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Tags: Algorithms, Bioinformatics, Biology, Clustering, Compression, CUDA, nVidia, Package, Sequence alignment, Tesla M2090

December 27, 2013 by hgpu

BbmTTP: Beat-based Parallel Simulated Annealing Algorithm on GPGPUs for the Mirrored Traveling Tournament Problem

Vijay Menon, Saurabh Jha

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Tags: Algorithms, Computer science, CUDA, nVidia, Optimization, Package, Tesla M2050

December 27, 2013 by hgpu

Building Multiclass Nonlinear Classifiers with GPUs

Ignacio Arnaldo, Kalyan Veeramachaneni, Una-May O'Reilly

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 690

December 25, 2013 by hgpu

Efficiency analysis of a physical problem: Different parallel computational approaches for a dynamical integrator evolution

Adriana Gaudiani, Alejandro Soba, M. Florencia Carusela

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Tags: Algorithms, Computer science, CUDA, MPI, nVidia, nVidia GeForce GTX 560 Ti, Performance

December 25, 2013 by hgpu

Graphics Processing Units in Acceleration of Bandwidth Selection for Kernel Density Estimation

Witold Andrzejewski, Artur Gramacki, Jaroslaw Gramacki

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Tags: Algorithms, CUDA, nVidia, nVidia GeForce GTX 480, Package, Probability, Statistics

December 24, 2013 by hgpu

Scene Boundary Detection Technique Based on Bottom-Up Attention System and OpenCL Parallel Implementation

S. Axyonov, D. Kovalenko, I. Potapyev

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Tags: Algorithms, ATI, ATI Radeon HD 5850 M, Computer vision, Image processing, OpenCL

December 24, 2013 by hgpu

Hardware Acceleration Technologies in Computer Algebra: Challenges and Impact

Sardar Anisul Haque

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 285, Sorting, Sparse matrix, Tesla C2050, Tesla M2050, Thesis

December 23, 2013 by hgpu

Fast Training of Convolutional Networks through FFTs

Michael Mathieu, Mikael Henaff, Yann LeCun

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Tags: Algorithms, Computer science, Computer vision, CUDA, FFT, Machine learning, nVidia

December 23, 2013 by hgpu

Speed-Up Improvement Using Parallel Approach in Image Steganography

JyothiUpadhya K, U Dinesh Acharya, Hemalatha S

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Tags: Algorithms, Image processing, nVidia, nVidia GeForce GT 640, OpenCL

December 22, 2013 by hgpu

Accelerating Pairwise DNA Sequence Alignment using the CUDA Compatible GPU

H. Khaled, R. El Gohary, N. L. Badr, H. M. Faheem

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Tags: Algorithms, Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GT 540 M, Sequence alignment, Smith-Waterman algorithm

December 22, 2013 by hgpu

GPU Accelerated Graph SLAM and Occupancy Voxel Based ICP For Encoder-Free Mobile Robots

Adrian Ratter, Claude Sammut, Matthew McGill

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 570

December 21, 2013 by hgpu

Parallel Compact Genetic Algorithm on CUDA-C Platform

Vuppuluri Sumati

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Tags: Algorithms, Computer science, CUDA, Evolutionary Computations, Genetic programming, nVidia

December 21, 2013 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Programming

HUGO: Hierarchical mUlti-reference Genome cOmpression for aligned reads

BbmTTP: Beat-based Parallel Simulated Annealing Algorithm on GPGPUs for the Mirrored Traveling Tournament Problem

Building Multiclass Nonlinear Classifiers with GPUs

Efficiency analysis of a physical problem: Different parallel computational approaches for a dynamical integrator evolution

Graphics Processing Units in Acceleration of Bandwidth Selection for Kernel Density Estimation

Scene Boundary Detection Technique Based on Bottom-Up Attention System and OpenCL Parallel Implementation

Hardware Acceleration Technologies in Computer Algebra: Challenges and Impact

Fast Training of Convolutional Networks through FFTs

Speed-Up Improvement Using Parallel Approach in Image Steganography

Accelerating Pairwise DNA Sequence Alignment using the CUDA Compatible GPU

GPU Accelerated Graph SLAM and Occupancy Voxel Based ICP For Encoder-Free Mobile Robots

Parallel Compact Genetic Algorithm on CUDA-C Platform

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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