high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications

Accelerating molecular modeling applications with graphics processors

John E. Stone, James C. Phillips, Peter L. Freddolino, David J. Hardy, Leonardo G. Trabuco, Klaus Schulten

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Tags: Chemistry, Computational chemistry, CUDA, Electrostatic potential, Molecular dynamics, Molecular modeling, Multilevel summation, nVidia, nVidia GeForce 8800 GTX

October 30, 2010 by hgpu

Mars: a MapReduce framework on graphics processors

Bingsheng He, Wenbin Fang, Qiong Luo, Naga K. Govindaraju, Tuyong Wang

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Tags: Computer science, CUDA, Data parallelism, MapReduce, nVidia, nVidia GeForce 8800 GTX, Package, Programming techniques, Web Analysis

October 30, 2010 by hgpu

Exploiting graphics processing units for computational biology and bioinformatics

Joshua L. Payne, Nicholas A. Sinnott-Armstrong, Jason H. Moore

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Tags: All-Pairs Distance, Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 9600 M, Package

October 30, 2010 by hgpu

High performance direct gravitational N-body simulations on graphics processing units II: An implementation in CUDA

Robert G. Belleman, Jeroen Bedorf, Simon F. Portegies Zwart

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Tags: Astrophysics, CUDA, Gravitation, N-body simulation, nVidia, nVidia GeForce 8800 GTX, Stellar dynamics

October 30, 2010 by hgpu

Accelerating molecular dynamic simulation on graphics processing units

Mark S. Friedrichs, Peter Eastman, Vishal Vaidyanathan, Mike Houston, Scott Legrand, Adam L. Beberg, Daniel L. Ensign, Christopher M. Bruns, Vijay S. Pande

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Tags: ATI, ATI Radeon HD 4870, ATI Stream, Biology, Brook, Chemistry, Computational chemistry, Molecular dynamics, nVidia, nVidia GeForce GTX 280, Package, Solvent effects

October 30, 2010 by hgpu

A performance study of general-purpose applications on graphics processors using CUDA

S. Che, M. Boyer, J. Meng, D. Tarjan, J. Sheaffer, K. Skadron

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 260, OpenMP, Package, Performance

October 30, 2010 by hgpu

Rise of the Graphics Processor

D. Blythe

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Tags: Computer science, Review

October 30, 2010 by hgpu

Solving quadratic assignment problems by genetic algorithms with GPU computation: a case study

Shigeyoshi Tsutsui, Noriyuki Fujimoto

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Tags: Algorithms, Artificial intelligence, Computer science, CUDA, nVidia, nVidia GeForce GTX 285, Programming techniques

October 30, 2010 by hgpu

Parallel Processing of Matrix Multiplication in a CPU and GPU Heterogeneous Environment

Satoshi Ohshima, Kenji Kise, Takahiro Katagiri, Toshitsugu Yuba

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Tags: Algorithms, Computer science, Linear Algebra, nVidia GeForce 6600 GT, nVidia GeForce 7800 GTX

October 29, 2010 by hgpu

Ultrasound goes GPU: real-time simulation using CUDA

Tobias Reichl, Josh Passenger, Oscar Acosta, Olivier Salvado

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Tags: CUDA, Image-guided therapy, Medicine, nVidia, nVidia GeForce 8800 GTX, Surgical simulation, Ultrasound, Visualization

October 29, 2010 by hgpu

High-order finite-element seismic wave propagation modeling with MPI on a large GPU cluster

Dimitri Komatitsch, Gordon Erlebacher, Dominik Goddeke, David Michea

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Tags: Computational Physics, CUDA, Finite element method, Geoscience, GPU cluster, MPI, Numerical simulation, nVidia, Physics, Seismic modeling, Spectral elements, Tesla S1060, Tesla S1070

October 29, 2010 by hgpu

Accelerating Image Retrieval Using Factorial Correspondence Analysis on GPU

Nguyen-Khang Pham, Annie Morin, Patrick Gros

Tags: CUBLAS, CUDA, Factorial correspondence analysis, Image processing, nVidia, SIFT

October 29, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

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high performance computing on graphics processing units: hgpu.org

Applications

Accelerating molecular modeling applications with graphics processors

Mars: a MapReduce framework on graphics processors

Exploiting graphics processing units for computational biology and bioinformatics

High performance direct gravitational N-body simulations on graphics processing units II: An implementation in CUDA

Accelerating molecular dynamic simulation on graphics processing units

A performance study of general-purpose applications on graphics processors using CUDA

Rise of the Graphics Processor

Solving quadratic assignment problems by genetic algorithms with GPU computation: a case study

Parallel Processing of Matrix Multiplication in a CPU and GPU Heterogeneous Environment

Ultrasound goes GPU: real-time simulation using CUDA

High-order finite-element seismic wave propagation modeling with MPI on a large GPU cluster

Accelerating Image Retrieval Using Factorial Correspondence Analysis on GPU

Recent source codes

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

Gaia AVU-GSR

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Most viewed papers (last 30 days)