high performance computing on graphics processing units: hgpu.org

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Massively parallel read mapping on GPUs with PEANUT

Johannes Koster, Sven Rahmann

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Tags: Computer science, Data Structures and Algorithms, nVidia, nVidia GeForce GTX 580, nVidia GeForce GTX 780, OpenCL, Package, Python

March 10, 2014 by hgpu

Converting Data to Task-Parallelism by Rewrites

Ryan R. Newton, Eric Holk, Trevor L. McDonell

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Tags: Computer science, CUDA, Haskell, nVidia, Package, Task scheduling, Tesla C2075

March 7, 2014 by hgpu

QuickProbs – A Fast Multiple Sequence Alignment Algorithm Designed for Graphics Processors

Adam Gudys, Sebastian Deorowicz

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Tags: ATI, ATI Radeon HD 7970, Bioinformatics, Biology, nVidia, nVidia GeForce GTX 480, nVidia GeForce GTX 580, nVidia GeForce GTX 680, OpenCL, Package, Sequence alignment

March 4, 2014 by hgpu

Scheduling data flow program in xkaapi: A new affinity based Algorithm for Heterogeneous Architectures

Raphael Bleuse, Thierry Gautier, Joao V. F. Lima, Gregory Mounie, Denis Trystram

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Tags: Algorithms, Computer science, CUDA, Linear Algebra, nVidia, Package, Tesla C2050

February 28, 2014 by hgpu

Extending the Generalized Fermat Prime Number Search Beyond One Million Digits Using GPUs

Iain Bethune, Michael Goetz

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Tags: CUDA, Mathematics, nVidia, nVidia GeForce GTX 460, Package

February 27, 2014 by hgpu

MICA: A fast short-read aligner that takes full advantage of Intel Many Integrated Core Architecture (MIC)

Sze-Hang Chan, Jeanno Cheung, Edward Wu, Heng Wang, Chi-Man Liu, Xiaoqian Zhu, Shaoliang Peng, Ruibang Luo, Tak-Wah Lam

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Tags: Bioinformatics, Biology, Intel Xeon Phi, Package

February 21, 2014 by hgpu

Fast Hamiltonian Monte Carlo Using GPU Computing

Andrew L. Beam, Sujit K. Ghosh, Jon Doyle

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Tags: Algorithms, Bayesian, CUDA, CULA, Monte Carlo simulation, nVidia, Package, Python, Statistics, Tesla K20

February 19, 2014 by hgpu

Optimizing Performance of Stencil Code with SPL Conqueror

Alexander Grebhahn, Norbert Siegmund, Sven Apel, Sebastian Kuckuk, Christian Schmitt, Harald Kostler

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Tags: Computer science, CUDA, Differential equations, Finite difference, Image processing, nVidia, OpenCL, Package, Partial differential equations, PDEs, Tesla K20

February 17, 2014 by hgpu

Work-Efficient Parallel GPU Methods for Single-Source Shortest Paths

Andrew Davidson, Sean Baxter, Michael Garland, John D. Owens

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Tags: Algorithms, Computer science, CUDA, Graph theory, nVidia, nVidia GeForce GTX 680, Package

February 15, 2014 by hgpu

Effective Multi-Modal Retrieval based on Stacked Auto-Encoders

Wei Wang, Beng Chin Ooi, Xiaoyan Yang, Dongxiang Zhang, Yueting Zhuang

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Tags: Computer science, CUDA, Information Retrieval, nVidia, nVidia GeForce GTX Titan, Package, Python

February 14, 2014 by hgpu

Multi-Kepler GPU vs. Multi-Intel MIC for spin systems simulations

M. Bernaschi, M. Bisson, F. Salvadore

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Tags: Benchmarking, Computer science, CUDA, Intel Xeon Phi, nVidia, Package, Performance, Physics, Spin Systems, Tesla K20

February 14, 2014 by hgpu

Genetically Improved CUDA C++ Software

W. B. Langdon, M. Harman

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Tags: Computer science, CUDA, Genetic programming, nVidia, nVidia GeForce GTX 295, nVidia GeForce GTX 580, nVidia Quadro NVS 290, Package, Tesla C2050, Tesla K20, Tesla T10

February 11, 2014 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Packages

Massively parallel read mapping on GPUs with PEANUT

Converting Data to Task-Parallelism by Rewrites

QuickProbs – A Fast Multiple Sequence Alignment Algorithm Designed for Graphics Processors

Scheduling data flow program in xkaapi: A new affinity based Algorithm for Heterogeneous Architectures

Extending the Generalized Fermat Prime Number Search Beyond One Million Digits Using GPUs

MICA: A fast short-read aligner that takes full advantage of Intel Many Integrated Core Architecture (MIC)

Fast Hamiltonian Monte Carlo Using GPU Computing

Optimizing Performance of Stencil Code with SPL Conqueror

Work-Efficient Parallel GPU Methods for Single-Source Shortest Paths

Effective Multi-Modal Retrieval based on Stacked Auto-Encoders

Multi-Kepler GPU vs. Multi-Intel MIC for spin systems simulations

Genetically Improved CUDA C++ Software

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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