high performance computing on graphics processing units: hgpu.org

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Large Scale Bioinformatics Data Mining with Parallel Genetic Programming on Graphics Processing Units

William B. Langdon

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Tags: Computer science, Genetic programming, nVidia, nVidia GeForce 8800 GTX, OpenGL, Package, RapidMind

January 21, 2011 by hgpu

Relational query coprocessing on graphics processors

Bingsheng He, Mian Lu, Ke Yang, Rui Fang, Naga K. Govindaraju, Qiong Luo, Pedro V. Sander

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Tags: Algorithms, Computer science, CUDA, Databases, nVidia, nVidia GeForce 8800 GTX, Package, Performance

January 19, 2011 by hgpu

Message passing for GPGPU clusters: CudaMPI

Orion S. Lawlor

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Tags: Computer science, CUDA, GPU cluster, nVidia, nVidia GeForce GTX 280, OpenMPI, Package

January 18, 2011 by hgpu

An exploration of CUDA and CBEA for a gravitational wave data-analysis application (Einstein@Home)

Jens Breitbart, Gaurav Khanna

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Tags: Computational Physics, CUDA, General Relativity and Quantum Cosmology, nVidia, nVidia GeForce GTX 280, Package, Physics

January 18, 2011 by hgpu

Highly accelerated simulations of glassy dynamics using GPUs: caveats on limited floating-point precision

Peter H. Colberg, Felix Hofling

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Tags: Computational Physics, CUDA, nVidia, nVidia GeForce 8800 GTX, nVidia GeForce GTX 280, Package, Physics, Soft Condensed Matter

January 18, 2011 by hgpu

Solving dense linear systems on platforms with multiple hardware accelerators

Enrique S. Quintana-Orti, Francisco D. Igual, Enrique S. Quintana-Orti, Robert A. van de Geijn

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Tags: Computer science, CUDA, GPU cluster, Linear Algebra, nVidia, Package, Task scheduling, Tesla S870

January 17, 2011 by hgpu

Using generalized ensemble simulations and Markov state models to identify conformational states

Gregory R. Bowman, Xuhui Huang, Vijay S. Pande

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Tags: CUDA, Molecular dynamics, Molecular modeling, nVidia, Package, Physics, Thermodynamics

January 16, 2011 by hgpu

Daubechies wavelets for high performance electronic structure calculations: The BigDFT project

Luigi Genovese, Brice Videau, Matthieu Ospici, Thierry Deutsch, Stefan Goedecker, Jean-Francois Mehaut

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Tags: Chemistry, Molecular modeling, OpenCL, Package, Physics

January 16, 2011 by hgpu

Fluid-solid coupling on a cluster of GPU graphics cards for seismic wave propagation

Dimitri Komatitsch

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Tags: CUDA, Earth and Space Sciences, Finite element method, Geoscience, nVidia, Package, Seismic modeling, Seismology, Tesla S1070

January 16, 2011 by hgpu

Barra: A Parallel Functional Simulator for GPGPU

Sylvain Collange, Marc Daumas, David Defour, David

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Tags: Computer science, CUDA, nVidia, nVidia GeForce 9800 GX2, Package

January 15, 2011 by hgpu

Practical CFD Simulations on Programmable Graphics Hardware using SMAC

Carlos Eduardo Scheidegger, Joao L.D. Comba, Rudnei D. Da Cunha

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Tags: Cg, Fluid dynamics, Navier-Stokes equations, NSEs, nVidia, nVidia GeForce 6800 Ultra, nVidia GeForce FX 5900, OpenGL, Package

January 14, 2011 by hgpu

GPU accelerated biochemical network simulation

Yanxiang Zhou, Juliane Liepe, Xia Sheng, Michael P. H. Stumpf, Chris Barnes

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Tags: Bioinformatics, Biology, CUDA, GPU cluster, nVidia, Package, Tesla C2050

January 13, 2011 by hgpu

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

BoltzGen:Toward Universal Binder Design

CUDA-L2: Surpassing cuBLAS Performance for Matrix Multiplication through Reinforcement Learning

cuPilot: A Strategy-Coordinated Multi-agent Framework for CUDA Kernel Evolution

MATLAB Tensor Core models

Accurate Models of NVIDIA Tensor Cores

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high performance computing on graphics processing units: hgpu.org

Packages

Large Scale Bioinformatics Data Mining with Parallel Genetic Programming on Graphics Processing Units

Relational query coprocessing on graphics processors

Message passing for GPGPU clusters: CudaMPI

An exploration of CUDA and CBEA for a gravitational wave data-analysis application (Einstein@Home)

Highly accelerated simulations of glassy dynamics using GPUs: caveats on limited floating-point precision

Solving dense linear systems on platforms with multiple hardware accelerators

Using generalized ensemble simulations and Markov state models to identify conformational states

Daubechies wavelets for high performance electronic structure calculations: The BigDFT project

Fluid-solid coupling on a cluster of GPU graphics cards for seismic wave propagation

Barra: A Parallel Functional Simulator for GPGPU

Practical CFD Simulations on Programmable Graphics Hardware using SMAC

GPU accelerated biochemical network simulation

Recent source codes

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

BoltzGen:Toward Universal Binder Design

CUDA-L2: Surpassing cuBLAS Performance for Matrix Multiplication through Reinforcement Learning

cuPilot: A Strategy-Coordinated Multi-agent Framework for CUDA Kernel Evolution

MATLAB Tensor Core models

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