high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications

Parallel Computation of Functions on Set Partitions

Chetan Rokhade

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce 8400 GS, Thesis

May 25, 2014 by hgpu

GPU accelerated toolbox for real-time beam-shaping in multimode fibres

M. Ploschner, B. Straka, K. Dholakia, T. Cizmar

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Tags: Computer holography, CUDA, nVidia, nVidia GeForce GTX 570, nVidia GeForce GTX 780, Optics, Package, Physics

May 25, 2014 by hgpu

GPU-BSM: A GPU-Based Tool to Map Bisulfite-Treated Reads

Andrea Manconi, Alessandro Orro, Emanuele Manca, Giuliano Armano, Luciano Milanesi

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Tags: Bioinformatics, Biology, CUDA, Genetics, nVidia, nVidia GeForce GTX 480, Package, Python, Sequence alignment, Tesla K10, Tesla K20

May 25, 2014 by hgpu

Graphic Processing Unit Simulation of Axon Growth and Guidance through Cue Diffusion on Massively Parallel Processors

Ana M. Mihut, Graham Morgan, Marcus Kaiser

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Tags: Biology, CUDA, GLSL, Neuroscience, nVidia, nVidia GeForce GTX 460, nVidia Quadro 600, OpenGL, Programming techniques, Tesla K20

May 24, 2014 by hgpu

Tri-Hybrid Computational Fluid Dynamics on DOE’s Cray XK7, Titan

Aaron Vose, Brian Mitchell, John Levesque

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Tags: CUDA, Fluid dynamics, MPI, nVidia, OpenACC, Tesla K20

May 24, 2014 by hgpu

GPU Accelerated Molecular Dynamics Simulation, Visualization, and Analysis

Ivan Teo, Juan Perilla, Rezvan Shahoei, Ryan McGreevy, Chris Harrison

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Tags: Computer science, CUDA, Molecular dynamics, nVidia, Tutorial, Visualization

May 24, 2014 by hgpu

A GPU-Based Simulation Kernel within Heterogeneous Collaborative Computation on Large-Scale Artificial Society

Li Zhen, Qiuxiao Gang, Guo Gang, Chen Bin

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Tags: Computer science, CUDA, Heterogeneous systems, MPI, nVidia, Task scheduling, Tesla C2050

May 24, 2014 by hgpu

Exploring the Multitude of Real-Time Multi-GPU Configurations

Glenn A. Elliott, James H. Anderson

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Tags: Computer science, CUDA, nVidia, nVidia Quadro K5000, Task scheduling

May 24, 2014 by hgpu

Review of Memory/Cache Management Technologies used on Heterogeneous Computing Systems

Mustafa Ali, Tarik Ozkul

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Tags: Computer science, Heterogeneous systems, Memory, Review

May 23, 2014 by hgpu

An Extensible Component-based Approach to Simulation Systems on Heterogeneous Clusters

Roger Viet Hoang

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Tags: Computer science, CUDA, Heterogeneous systems, nVidia, nVidia GeForce GTX 480, nVidia GeForce GTX 570, Performance, Tesla C2050, Thesis, Virtual reality

May 23, 2014 by hgpu

A Comparison of Massively Parallel Programming Models Through Applications in Sound Propagation and Jitter Measurement

Torbjorn Panton Loken

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Tags: Acoustics, Computer science, CUDA, nVidia, nVidia GeForce GTX 480, OpenGL, Thesis, Thrust

May 23, 2014 by hgpu

cuBLASTP: Fine-Grained Parallelization of Protein Sequence Search on a GPU

Jing Zhang, Hao Wang, Heshan Lin, Wu-chun Feng

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Tags: Bioinformatics, Biology, CUDA, Next-Generation sequencing, nVidia, Sequence alignment, Tesla K20

May 23, 2014 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

See all packages

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high performance computing on graphics processing units: hgpu.org

Applications

Parallel Computation of Functions on Set Partitions

GPU accelerated toolbox for real-time beam-shaping in multimode fibres

GPU-BSM: A GPU-Based Tool to Map Bisulfite-Treated Reads

Graphic Processing Unit Simulation of Axon Growth and Guidance through Cue Diffusion on Massively Parallel Processors

Tri-Hybrid Computational Fluid Dynamics on DOE’s Cray XK7, Titan

GPU Accelerated Molecular Dynamics Simulation, Visualization, and Analysis

A GPU-Based Simulation Kernel within Heterogeneous Collaborative Computation on Large-Scale Artificial Society

Exploring the Multitude of Real-Time Multi-GPU Configurations

Review of Memory/Cache Management Technologies used on Heterogeneous Computing Systems

An Extensible Component-based Approach to Simulation Systems on Heterogeneous Clusters

A Comparison of Massively Parallel Programming Models Through Applications in Sound Propagation and Jitter Measurement

cuBLASTP: Fine-Grained Parallelization of Protein Sequence Search on a GPU

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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