high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications

GAMUT: GPU accelerated microRNA analysis to uncover target genes through CUDA-miRanda

Shuang Wang, Jihoon Kim, Xiaoqian Jiang, Stefan F Brunner, Lucila Ohno-Machado

View

Download (PDF)

Source codes

Tags: Bioinformatics, Biology, CUDA, nVidia, Package, RNA, Smith-Waterman algorithm, Tesla M2090

May 10, 2014 by hgpu

3D Objects Tracking by GPGPU-Enhanced Particle Filter Algorithms

Jieyun Zhou, Masayuki Numao, Xiaofeng Li, Haitao Chen

View

Download (PDF)

Tags: Algorithms, Computer science, Computer vision, CUDA, nVidia, nVidia GeForce 9300 M, nVidia GeForce GTX 480, OpenCV, Particle filtering

May 10, 2014 by hgpu

Automatic Scheduling of Compute Kernels Across Heterogeneous Architectures

Robert F. Lyerly

View

Download (PDF)

Tags: Compilers, Computer science, Heterogeneous systems, Intel Xeon Phi, Machine learning, nVidia, OpenCL, OpenMP, Task scheduling, Tesla C2075

May 9, 2014 by hgpu

Applying Source Level Auto-Vectorization to Aparapi Java

Frank Curtis Albert

View

Download (PDF)

Tags: Computer science, CUDA, Java, nVidia, nVidia GeForce GTX Titan, OpenCL, Thesis

May 9, 2014 by hgpu

Acceleration of LSB Algorithm in GPU

Darshan R, Prabu R, Divya M

View

Download (PDF)

Tags: Algorithms, Computer science, CUDA, nVidia

May 9, 2014 by hgpu

GPU Implementation of Parallel Support Vector Machine Algorithm with Applications to Detection Intruder

Xueqin Zhang, Yifeng Zhang, Chunhua Gu

View

Download (PDF)

Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTS 250, Security

May 9, 2014 by hgpu

Understanding Protein Dynamics with L1-Regularized Reversible Hidden Markov Models

Robert T. McGibbon, Bharath Ramsundar, Mohammad M. Sultan, Gert Kiss, Vijay S. Pande

View

Download (PDF)

Tags: Algorithms, Biology, Biophysics, CUDA, Distributed computing, Machine learning, Molecular dynamics, nVidia, nVidia GeForce GTX Titan

May 9, 2014 by hgpu

Managing the Topology of Heterogeneous Cluster Nodes with Hardware Locality (hwloc)

Brice Goglin

View

Download (PDF)

Source codes

Tags: Computer science, CUDA, GPU cluster, Heterogeneous systems, nVidia, OpenMPI, Package, Xeon Phi

May 7, 2014 by hgpu

3D data denoising via Non-Local means filter by using parallel GPU strategies

Salvatore Cuomo, Pasquale De Michele, Francesco Piccialli

View

Download (PDF)

Tags: Algorithms, CUDA, Filtering, Image processing, Magnetic resonance imaging, MRI, nVidia, Tesla S2050

May 7, 2014 by hgpu

Simulation of earthquake sloshing loads in a nuclear reactor

J.L. Cercos-Pita, L.M. Gonzalez, A. Moreno, A. Guerrero, S. Salgado

View

Download (PDF)

Tags: ATI, ATI Radeon HD 7970, Earth and Space Sciences, nVidia, nVidia GeForce GTX Titan, OpenCL

May 7, 2014 by hgpu

Learning Sparse Recurrent Neural Networks in Language Modeling

Yuanlong Shao

View

Download (PDF)

Tags: Computer science, CUDA, Neural networks, nVidia, nVidia GeForce GTX Titan, Thesis

May 7, 2014 by hgpu

Evolution of a double-front Rayleigh-Taylor system using a GPU-based high resolution thermal Lattice-Boltzmann model

P. Ripesi, L. Biferale, S.F. Schifano, R. Tripiccione

View

Download (PDF)

Tags: CUDA, Fluid dynamics, Lattice Boltzmann model, nVidia, Tesla C2050, Tesla K20

May 7, 2014 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

See all packages

* * *

high performance computing on graphics processing units: hgpu.org

Applications

GAMUT: GPU accelerated microRNA analysis to uncover target genes through CUDA-miRanda

3D Objects Tracking by GPGPU-Enhanced Particle Filter Algorithms

Automatic Scheduling of Compute Kernels Across Heterogeneous Architectures

Applying Source Level Auto-Vectorization to Aparapi Java

Acceleration of LSB Algorithm in GPU

GPU Implementation of Parallel Support Vector Machine Algorithm with Applications to Detection Intruder

Understanding Protein Dynamics with L1-Regularized Reversible Hidden Markov Models

Managing the Topology of Heterogeneous Cluster Nodes with Hardware Locality (hwloc)

3D data denoising via Non-Local means filter by using parallel GPU strategies

Simulation of earthquake sloshing loads in a nuclear reactor

Learning Sparse Recurrent Neural Networks in Language Modeling

Evolution of a double-front Rayleigh-Taylor system using a GPU-based high resolution thermal Lattice-Boltzmann model

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

Most viewed papers (last 30 days)