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CUDA programs for GPU computing of Swendsen-Wang multi-cluster spin flip algorithm: 2D and 3D Ising, Potts, and XY models

Yukihiro Komura, Yutaka Okabe

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Tags: Algorithms, Computational Physics, CUDA, Ising model, nVidia, nVidia GeForce GTX 580, Phase transition, Physics, Statistical Mechanics

April 4, 2014 by hgpu

An efficient GPU acceptance-rejection algorithm for the selection of the next reaction to occur for Stochastic Simulation Algorithms

Neri Mickael, Denis Mestivier

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Tags: Algorithms, Biology, Computer science, CUDA, nVidia, Optimization, Stochastic simulation, Tesla K10, Tesla K20, Tesla M2075, Tesla M2090

April 4, 2014 by hgpu

Irradiation Instability at the Inner Edges of Accretion Disks

Jeffrey Fung, Pawel Artymowicz

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Tags: Astrophysics, CUDA, Earth and Planetary Astrophysics, hydrodynamics, nVidia, nVidia GeForce GTX Titan

April 4, 2014 by hgpu

Anomalous metastability in a temperature-driven transition

Miguel Ibanez Berganza, Pietro Coletti, Alberto Petri

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Tags: Algorithms, Condensed matter, CUDA, Ising model, nVidia, Phase transition, Physics, Statistical Mechanics, Tesla K20

April 4, 2014 by hgpu

Petascale computations for Large-scale Atomic and Molecular collisions

Brendan M McLaughlin, Connor P Ballance

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Tags: BLAS, Computational Physics, Computer science, CUDA, Fortran, Molecular simulation, MPI, nVidia, Tesla K20

April 4, 2014 by hgpu

Experiments with Massively Parallel Matrix Multiplication

T. W. O’Neil

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Tags: Algorithms, CUDA, Linear Algebra, Mathematics, nVidia, nVidia Tesla C2070

April 3, 2014 by hgpu

Multicore and GPU Algorithms for Nussinov RNA Folding

J. Li, S. Ranka, S. Sahni

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Tags: Biology, CUDA, nVidia, nVidia Tesla C2050, RNA

April 3, 2014 by hgpu

Pairwise Sequence Alignment for Very Long Sequences on GPUs

J. Li, S. Ranka, S. Sahni

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Tags: CUDA, Genetics, nVidia, nVidia Tesla C2050, Sequence alignment, Smith-Waterman algorithm

April 2, 2014 by hgpu

Acceleration of Diagrammatic Determinantal Quantum Monte Carlo Calculations using GPUs

M. Schmitt, I. Bethune, P. Haase, T. Pruschke

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Tags: CUDA, Monte Carlo simulation, nVidia, nVidia Tesla C2050, Physics, Quantum Physics

April 2, 2014 by hgpu

A Novel Open Source Morphology Using GPU Processing With LTU-CUDA

G. Jagannathan, R. Subash, K. Senthil Raja

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Tags: CUDA, Image processing, nVidia, nVidia GeForce GTX 480

April 2, 2014 by hgpu

GPU Based Performance Acceleration of Radar Imaging Algorithms

V. Jithesh, K.P. Jacob

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Tags: Algorithms, CUDA, Electrodynamics, nVidia, nVidia GeForce GT 610, OpenCL

April 1, 2014 by hgpu

Enhanced Parallel NegaMax Tree Search Algorithm on GPU

A.A. Elnaggar, M. Gadallah, M.A. Aziem , H. El-Deeb

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Tags: Algorithms, Artificial intelligence, CUDA, nVidia, nVidia GeForce GT 740 M, OpenCL, Search startegies

April 1, 2014 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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high performance computing on graphics processing units: hgpu.org

Programming

CUDA programs for GPU computing of Swendsen-Wang multi-cluster spin flip algorithm: 2D and 3D Ising, Potts, and XY models

An efficient GPU acceptance-rejection algorithm for the selection of the next reaction to occur for Stochastic Simulation Algorithms

Irradiation Instability at the Inner Edges of Accretion Disks

Anomalous metastability in a temperature-driven transition

Petascale computations for Large-scale Atomic and Molecular collisions

Experiments with Massively Parallel Matrix Multiplication

Multicore and GPU Algorithms for Nussinov RNA Folding

Pairwise Sequence Alignment for Very Long Sequences on GPUs

Acceleration of Diagrammatic Determinantal Quantum Monte Carlo Calculations using GPUs

A Novel Open Source Morphology Using GPU Processing With LTU-CUDA

GPU Based Performance Acceleration of Radar Imaging Algorithms

Enhanced Parallel NegaMax Tree Search Algorithm on GPU

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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