high performance computing on graphics processing units: hgpu.org

Programming

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Complexity effective memory access scheduling for many-core accelerator architectures

George L. Yuan, Ali Bakhoda, Tor M. Aamodt

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Tags: Architecture, Computer science, CUDA, Hardware, Memory, nVidia

November 28, 2010 by hgpu

A Massively Parallel Architecture for Bioinformatics

Gerd Pfeiffer, Stefan Baumgart, Jan Schroder, Manfred Schimmler

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Tags: Algorithms, Bioinformatics, Biology, FPGA, MapReduce

November 27, 2010 by hgpu

Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA

Haixiang Shi, B. Schmidt, Weiguo Liu, W. Muller-Wittig

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Tags: Algorithms, Computer science, CUDA, Error recovery, nVidia, nVidia GeForce GTX 280

November 27, 2010 by hgpu

Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA

Yongchao Liu, Bertil Schmidt, Douglas L. Maskell

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 280, Sequence alignment, Smith-Waterman algorithm

November 27, 2010 by hgpu

Towards Accelerated Computation of Atmospheric Equations Using CUDA

Vaclav Simek, Radim Dvorak, Frantisek Zboril, Jiri Kunovsky

Tags: CUDA, Earth and Space Sciences, nVidia, Partial differential equations, PDEs

November 27, 2010 by hgpu

Boids that see: Using self-occlusion for simulating large groups on GPUs

Alessandro R. Da Silva, Wallace S. Lages, Luiz Chaimowicz

Tags: Artificial intelligence, Computer science, CUDA, Games, nVidia

November 27, 2010 by hgpu

An emotionally biased ant colony algorithm for pathfinding in games

Jose A. Mocholi, Javier Jaen, Alejandro Catala, Elena Navarro

Tags: Algorithms, Computer science, Games, Path problems

November 27, 2010 by hgpu

Particle-Based Multiple Irregular Volume Rendering on CUDA

Ding Zhongming, Takuma Kawamura, Naohisa Sakamoto, Koji Koyamada

Tags: Computer science, CUDA, nVidia, nVidia GeForce 8800 GTS, Rendering

November 27, 2010 by hgpu

Fast Conjugate Gradients with Multiple GPUs

Ali Cevahir, Akira Nukada, Satoshi Matsuoka

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Tags: Computer science, Conjugate gradient solver, CUDA, Linear Algebra, Matrix multiplication, nVidia, nVidia GeForce 8800 GTS

November 27, 2010 by hgpu

A Note on Auto-tuning GEMM for GPUs

Yinan Li, Jack Dongarra, Stanimire Tomov

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Tags: Computer science, CUDA, Linear Algebra, Matrix multiplication, nVidia, nVidia GeForce GTX 280

November 27, 2010 by hgpu

Modeling of tsunami waves and atmospheric swirling flows with graphics processing unit

Jessica Schmidt, Cecile Piret, Nan Zhang, Benjamin J. Kadlec, David A. Yuen, Yingchun Liu, Grady Barrett Wright, Erik O. D. Sevre

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Tags: CUDA, Earth and Space Sciences, Geoscience, nVidia, nVidia GeForce 8600 M GT, nVidia Quadro FX 5600

November 27, 2010 by hgpu

Accelerating Lattice Boltzmann Fluid Flow Simulations Using Graphics Processors

Peter Bailey, Joe Myre, Stuart D.C. Walsh, David J. Lilja, Martin O. Saar

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Tags: CUDA, Fluid dynamics, Lattice Boltzmann model, nVidia GeForce 8800 GTX, nVidia GeForce 8800 Ultra, nVidia GeForce 9800 GX2

November 27, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

See all packages

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high performance computing on graphics processing units: hgpu.org

Programming

Complexity effective memory access scheduling for many-core accelerator architectures

A Massively Parallel Architecture for Bioinformatics

Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA

Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA

Towards Accelerated Computation of Atmospheric Equations Using CUDA

Boids that see: Using self-occlusion for simulating large groups on GPUs

An emotionally biased ant colony algorithm for pathfinding in games

Particle-Based Multiple Irregular Volume Rendering on CUDA

Fast Conjugate Gradients with Multiple GPUs

A Note on Auto-tuning GEMM for GPUs

Modeling of tsunami waves and atmospheric swirling flows with graphics processing unit

Accelerating Lattice Boltzmann Fluid Flow Simulations Using Graphics Processors

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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