high performance computing on graphics processing units: hgpu.org

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Modeling the propagation of elastic waves using spectral elements on a cluster of 192 GPUs

Dimitri Komatitsch, Dominik Goddeke, Gordon Erlebacher, David Michea

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Tags: CUDA, Earth and Space Sciences, Geoscience, GPU cluster, MPI, nVidia, Tesla C1070

November 18, 2010 by hgpu

A GPGPU compiler for memory optimization and parallelism management

Yi Yang, Ping Xiang, Jingfei Kong, Huiyang Zhou

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Tags: Computer science, CUBLAS, CUDA, High-level Languages, nVidia, nVidia GeForce 8800 GTX, nVidia GeForce GTX 280, Package

November 18, 2010 by hgpu

Feature-preserving triangular geometry images for level-of-detail representation of static and skinned meshes

Wei W. Feng, Byung U. Kim, Yizhou Yu, Liang Peng, John Hart

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Tags: 3D Graphics and Realism, Algorithms, Computer science, CUDA, nVidia, nVidia GeForce 8800 GTS, Rendering

November 18, 2010 by hgpu

A flexible high-performance Lattice Boltzmann GPU code for the simulations of fluid flows in complex geometries

Massimo Bernaschi, Massimiliano Fatica, Simone Melchionna, Sauro Succi, Efthimios Kaxiras

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Tags: CUDA, Fluid dynamics, Lattice Boltzmann model, MPI, nVidia, nVidia GeForce 8600 M GT, Tesla C870

November 18, 2010 by hgpu

GPU-enabled FREALIGN: Accelerating single particle 3D reconstruction and refinement in Fourier space on graphic processors

Xueming Li, Nikolaus Grigorieff, Yifan Cheng

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Tags: Biology, CUDA, Electron microscopy, Image reconstruction, nVidia, Package

November 18, 2010 by hgpu

Low cost, high performance GPU computing solution for atomic resolution cryoEM single-particle reconstruction

Xiaokang Zhang, Xing Zhang, Z. Hong Zhou

Tags: Biology, Cryo-EM, CUDA, Image reconstruction, nVidia

November 18, 2010 by hgpu

An adaptive Expectation-Maximization algorithm with GPU implementation for electron cryomicroscopy

Hemant D. Tagare, Andrew Barthel, Fred J. Sigworth

Tags: Algorithms, Biology, Cryo-EM, CUDA, Image reconstruction, nVidia

November 18, 2010 by hgpu

Correlation analysis on GPU systems using NVIDIA’s CUDA

Daniel Gembris, Markus Neeb, Markus Gipp, Andreas Kugel, Reinhard Manner

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Tags: Computer science, CUDA, FPGA, Magnetic resonance imaging, Medicine, nVidia, nVidia GeForce 8800 GTX

November 17, 2010 by hgpu

Scalable parallel programming with CUDA

John Nickolls, Ian Buck, Michael Garland, Kevin Skadron

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Tags: Computer science, CUDA, nVidia, Programming techniques, Review

November 17, 2010 by hgpu

Fast free-form deformation using graphics processing units

Marc Modat, Gerard R. Ridgway, Zeike A. Taylor, Manja Lehmann, Josephine Barnes, David J. Hawkes, Nick C. Fox, Sebastien Ourselin

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Tags: Biology, CUDA, Image processing, Medicine, nVidia, nVidia GeForce 8800 GTX, Package

November 17, 2010 by hgpu

permGPU: Using graphics processing units in RNA microarray association studies

Ivo Shterev, Sin H. Jung, Stephen George, Kouros Owzar

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Tags: Bioinformatics, Biology, CUDA, Genetics, nVidia, nVidia GeForce GTX 280, Package, RNA

November 17, 2010 by hgpu

Accelerating Collapsed Variational Bayesian Inference for Latent Dirichlet Allocation with Nvidia CUDA Compatible Devices

Tomonari Masada, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri

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Tags: Computer science, CUDA, Latent Dirichlet allocation, nVidia, nVidia GeForce GTX 260

November 17, 2010 by hgpu

hpcbench: A set of benchmarking utilities for biomolecular simulation tools

Engineering Supercomputing Platforms for Biomolecular Applications

HPCTransCompile: An AI Compiler Generated Dataset for High-Performance CUDA Transpilation and LLM Preliminary Exploration

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high performance computing on graphics processing units: hgpu.org

Programming

Modeling the propagation of elastic waves using spectral elements on a cluster of 192 GPUs

A GPGPU compiler for memory optimization and parallelism management

Feature-preserving triangular geometry images for level-of-detail representation of static and skinned meshes

A flexible high-performance Lattice Boltzmann GPU code for the simulations of fluid flows in complex geometries

GPU-enabled FREALIGN: Accelerating single particle 3D reconstruction and refinement in Fourier space on graphic processors

Low cost, high performance GPU computing solution for atomic resolution cryoEM single-particle reconstruction

An adaptive Expectation-Maximization algorithm with GPU implementation for electron cryomicroscopy

Correlation analysis on GPU systems using NVIDIA’s CUDA

Scalable parallel programming with CUDA

Fast free-form deformation using graphics processing units

permGPU: Using graphics processing units in RNA microarray association studies

Accelerating Collapsed Variational Bayesian Inference for Latent Dirichlet Allocation with Nvidia CUDA Compatible Devices

Recent source codes

hpcbench: A set of benchmarking utilities for biomolecular simulation tools

HPCTransCompile: An AI Compiler Generated Dataset for High-Performance CUDA Transpilation and LLM Preliminary Exploration

chemtrain: Training Molecular Dynamics Potentials in JAX

microSYCL: SYCL micro-benchmarks repository

XaaS containers

CASS: Cuda-Amd aSSembly

Cluser of smartphones for edge computing application using TensorFlow

SYCL Container

CFAL-bench

Efficient Graph Embedding at Scale: Optimizing CPU-GPU-SSD Integration

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